2.500 Å
X-ray
2010-05-18
| Name: | 4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase, chloroplastic |
|---|---|
| ID: | HGGL_SECCE |
| AC: | Q9FYS3 |
| Organism: | Secale cereale |
| Reign: | Eukaryota |
| TaxID: | 4550 |
| EC Number: | 3.2.1.182 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 17.437 |
|---|---|
| Number of residues: | 26 |
| Including | |
| Standard Amino Acids: | 22 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 4 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.837 | 799.875 |
| % Hydrophobic | % Polar |
|---|---|
| 48.95 | 51.05 |
| According to VolSite | |

| HET Code: | HBO |
|---|---|
| Formula: | C9H9NO5 |
| Molecular weight: | 211.171 g/mol |
| DrugBank ID: | DB02185 |
| Buried Surface Area: | 54.41 % |
| Polar Surface area: | 79.23 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 2 |
| Rings: | 2 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| -55.0327 | -1.64953 | -2.51747 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| OHB | OE2 | GLU- 191 | 3.14 | 120.36 | H-Bond (Ligand Donor) |
| C5B | CG2 | THR- 194 | 4.5 | 0 | Hydrophobic |
| OHB | OG1 | THR- 194 | 3.43 | 122.54 | H-Bond (Protein Donor) |
| C9B | CZ | PHE- 198 | 3.61 | 0 | Hydrophobic |
| C7B | CE2 | PHE- 198 | 3.44 | 0 | Hydrophobic |
| C2B | CZ2 | TRP- 379 | 4.39 | 0 | Hydrophobic |
| C9B | CD2 | TRP- 379 | 3.87 | 0 | Hydrophobic |
| DuAr | DuAr | TRP- 379 | 3.74 | 0 | Aromatic Face/Face |
| O3B | O | HOH- 540 | 2.77 | 179.98 | H-Bond (Protein Donor) |