2.890 Å
X-ray
2015-01-16
Name: | Sodium-dependent dopamine transporter |
---|---|
ID: | DAT_DROME |
AC: | Q7K4Y6 |
Organism: | Drosophila melanogaster |
Reign: | Eukaryota |
TaxID: | 7227 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 67.661 |
---|---|
Number of residues: | 26 |
Including | |
Standard Amino Acids: | 26 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.165 | 1326.375 |
% Hydrophobic | % Polar |
---|---|
50.89 | 49.11 |
According to VolSite |
HET Code: | LDP |
---|---|
Formula: | C8H12NO2 |
Molecular weight: | 154.186 g/mol |
DrugBank ID: | DB00988 |
Buried Surface Area: | 72.38 % |
Polar Surface area: | 68.1 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 3 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
-10.7389 | 3.75618 | -25.2801 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C7 | CE1 | PHE- 43 | 4.14 | 0 | Hydrophobic |
N1 | OD2 | ASP- 46 | 3.12 | 121.12 | H-Bond (Ligand Donor) |
N1 | OD2 | ASP- 46 | 3.12 | 0 | Ionic (Ligand Cationic) |
C5 | CB | ALA- 117 | 4.3 | 0 | Hydrophobic |
O2 | O | ALA- 117 | 2.86 | 132.65 | H-Bond (Ligand Donor) |
C2 | CG1 | VAL- 120 | 3.73 | 0 | Hydrophobic |
C4 | CG1 | VAL- 120 | 3.58 | 0 | Hydrophobic |
O1 | OD1 | ASP- 121 | 2.79 | 164.04 | H-Bond (Ligand Donor) |
C3 | CB | TYR- 124 | 4.29 | 0 | Hydrophobic |
C7 | CZ | PHE- 325 | 4.36 | 0 | Hydrophobic |
C6 | CD1 | PHE- 325 | 3.37 | 0 | Hydrophobic |