2.890 Å
X-ray
2015-01-16
| Name: | Sodium-dependent dopamine transporter |
|---|---|
| ID: | DAT_DROME |
| AC: | Q7K4Y6 |
| Organism: | Drosophila melanogaster |
| Reign: | Eukaryota |
| TaxID: | 7227 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 67.661 |
|---|---|
| Number of residues: | 26 |
| Including | |
| Standard Amino Acids: | 26 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.165 | 1326.375 |
| % Hydrophobic | % Polar |
|---|---|
| 50.89 | 49.11 |
| According to VolSite | |

| HET Code: | LDP |
|---|---|
| Formula: | C8H12NO2 |
| Molecular weight: | 154.186 g/mol |
| DrugBank ID: | DB00988 |
| Buried Surface Area: | 72.38 % |
| Polar Surface area: | 68.1 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 2 |
| H-Bond Donors: | 3 |
| Rings: | 1 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| -10.7389 | 3.75618 | -25.2801 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C7 | CE1 | PHE- 43 | 4.14 | 0 | Hydrophobic |
| N1 | OD2 | ASP- 46 | 3.12 | 121.12 | H-Bond (Ligand Donor) |
| N1 | OD2 | ASP- 46 | 3.12 | 0 | Ionic (Ligand Cationic) |
| C5 | CB | ALA- 117 | 4.3 | 0 | Hydrophobic |
| O2 | O | ALA- 117 | 2.86 | 132.65 | H-Bond (Ligand Donor) |
| C2 | CG1 | VAL- 120 | 3.73 | 0 | Hydrophobic |
| C4 | CG1 | VAL- 120 | 3.58 | 0 | Hydrophobic |
| O1 | OD1 | ASP- 121 | 2.79 | 164.04 | H-Bond (Ligand Donor) |
| C3 | CB | TYR- 124 | 4.29 | 0 | Hydrophobic |
| C7 | CZ | PHE- 325 | 4.36 | 0 | Hydrophobic |
| C6 | CD1 | PHE- 325 | 3.37 | 0 | Hydrophobic |