scPDB - 1q84 entry

Protein Data Bank Entry:

PDB ID : 1q84

Resolution :2.450 Å

Experimental Method : X-ray

Deposition Date : 2003-08-20

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Acetylcholinesterase
ID:	ACES_MOUSE
AC:	P21836
Organism:	Mus musculus
Reign:	Eukaryota
TaxID:	10090
EC Number:	3.1.1.7

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	45.344
Number of residues:	48
Including
Standard Amino Acids:	42
Non Standard Amino Acids:	0
Water Molecules:	6
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
1.005	681.750

% Hydrophobic	% Polar
46.53	53.47
According to VolSite

Ligand :

HET Code:	TZ4
Formula:	C42H46N8
Molecular weight:	662.868 g/mol
DrugBank ID:	DB02226
Buried Surface Area:	59.95 %
Polar Surface area:	112.8 Å2

Number of
H-Bond Acceptors:	5
H-Bond Donors:	4
Rings:	8
Aromatic rings:	7
Anionic atoms:	0
Cationic atoms:	2
Rule of Five Violation:	2
Rotatable Bonds:	12

Mass center Coordinates

X	Y	Z
33.5754	23.2853	9.84394

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
N3	OH	TYR- 72	2.73	159.72	H-Bond (Ligand Donor)	false
C11	CB	ASP- 74	4.41	0	Hydrophobic	false
C29	CB	TRP- 86	4.13	0	Hydrophobic	false
C42	CZ3	TRP- 86	4.46	0	Hydrophobic	false
N5	OH	TYR- 124	3.5	152.94	H-Bond (Protein Donor)	false
C28	CZ	TYR- 124	4.48	0	Hydrophobic	false
C42	CB	SER- 203	4.13	0	Hydrophobic	false
C21	CZ3	TRP- 286	3.49	0	Hydrophobic	false
C4	CB	TRP- 286	3.93	0	Hydrophobic	false
C24	CH2	TRP- 286	4.38	0	Hydrophobic	false
C17	CB	TRP- 286	3.49	0	Hydrophobic	false
C1	CD1	LEU- 289	3.9	0	Hydrophobic	false
N1	O	SER- 293	3.17	154.37	H-Bond (Ligand Donor)	false
C24	CE1	PHE- 297	3.93	0	Hydrophobic	false
C25	CE1	TYR- 337	4.23	0	Hydrophobic	false
C35	CB	TYR- 337	3.85	0	Hydrophobic	false
DuAr	DuAr	TYR- 337	3.47	0	Aromatic Face/Face	false
C25	CD2	PHE- 338	3.92	0	Hydrophobic	false
C22	CB	TYR- 341	4.11	0	Hydrophobic	false
C25	CG	TYR- 341	3.99	0	Hydrophobic	false
C36	CZ2	TRP- 439	3.37	0	Hydrophobic	false
N8	O	HIS- 447	2.91	159.43	H-Bond (Ligand Donor)	false