sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
1.650 Å
X-ray
2007-04-01
| Min | Mean | Median | Standard Deviation | Max | Count | |
|---|---|---|---|---|---|---|
| pChEMBL: | 7.720 | 7.720 | 7.720 | 0.000 | 7.720 | 1 |
| Name: | Aldose reductase |
|---|---|
| ID: | ALDR_HUMAN |
| AC: | P15121 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 1.1.1.21 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 13.853 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 33 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | NAP |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.076 | 519.750 |
| % Hydrophobic | % Polar |
|---|---|
| 57.14 | 42.86 |
| According to VolSite | |
| HET Code: | ZST |
|---|---|
| Formula: | C19H11F3N3O3S |
| Molecular weight: | 418.369 g/mol |
| DrugBank ID: | DB08772 |
| Buried Surface Area: | 77.2 % |
| Polar Surface area: | 113.93 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 0 |
| Rings: | 4 |
| Aromatic rings: | 3 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| 16.9445 | -6.63855 | 14.2865 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C17 | CD2 | TRP- 20 | 3.77 | 0 | Hydrophobic |
| C6 | CG2 | VAL- 47 | 4.21 | 0 | Hydrophobic |
| C7 | CG1 | VAL- 47 | 4.03 | 0 | Hydrophobic |
| C17 | CE1 | TYR- 48 | 4.39 | 0 | Hydrophobic |
| O3 | OH | TYR- 48 | 2.77 | 165.12 | H-Bond (Protein Donor) |
| S1 | CH2 | TRP- 79 | 3.99 | 0 | Hydrophobic |
| C13 | SG | CYS- 80 | 4.33 | 0 | Hydrophobic |
| O3 | NE2 | HIS- 110 | 2.62 | 150.3 | H-Bond (Protein Donor) |
| S1 | CZ2 | TRP- 111 | 3.4 | 0 | Hydrophobic |
| F1 | CE3 | TRP- 111 | 4.06 | 0 | Hydrophobic |
| C13 | CB | TRP- 111 | 4.27 | 0 | Hydrophobic |
| O2 | NE1 | TRP- 111 | 2.98 | 163.4 | H-Bond (Protein Donor) |
| DuAr | DuAr | TRP- 111 | 3.74 | 0 | Aromatic Face/Face |
| F1 | CG2 | THR- 113 | 3.47 | 0 | Hydrophobic |
| F2 | CZ | PHE- 115 | 3.83 | 0 | Hydrophobic |
| S1 | CZ | PHE- 122 | 3.88 | 0 | Hydrophobic |
| C9 | CH2 | TRP- 219 | 3.45 | 0 | Hydrophobic |
| C9 | SG | CYS- 298 | 4.13 | 0 | Hydrophobic |
| C17 | SG | CYS- 298 | 3.97 | 0 | Hydrophobic |
| C9 | CG | LEU- 300 | 4.06 | 0 | Hydrophobic |
| N3 | N | LEU- 300 | 3.06 | 169.69 | H-Bond (Protein Donor) |
| C16 | CG | LEU- 301 | 3.88 | 0 | Hydrophobic |
| F2 | CD1 | LEU- 301 | 3.51 | 0 | Hydrophobic |
| F3 | CG2 | THR- 304 | 3.46 | 0 | Hydrophobic |
| F3 | CD1 | TYR- 309 | 3.26 | 0 | Hydrophobic |
| C17 | C4N | NAP- 500 | 3.48 | 0 | Hydrophobic |
