2.750 Å
X-ray
2000-08-17
| Name: | Retinol dehydratase |
|---|---|
| ID: | Q26490_SPOFR |
| AC: | Q26490 |
| Organism: | Spodoptera frugiperda |
| Reign: | Eukaryota |
| TaxID: | 7108 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 29.846 |
|---|---|
| Number of residues: | 27 |
| Including | |
| Standard Amino Acids: | 26 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.451 | 1248.750 |
| % Hydrophobic | % Polar |
|---|---|
| 59.73 | 40.27 |
| According to VolSite | |

| HET Code: | RTL |
|---|---|
| Formula: | C20H30O |
| Molecular weight: | 286.452 g/mol |
| DrugBank ID: | DB00162 |
| Buried Surface Area: | 54.26 % |
| Polar Surface area: | 20.23 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 1 |
| H-Bond Donors: | 1 |
| Rings: | 1 |
| Aromatic rings: | 0 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| 44.329 | 7.95862 | 5.82486 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C16 | CZ | PHE- 31 | 4.06 | 0 | Hydrophobic |
| C15 | CZ | TYR- 105 | 3.76 | 0 | Hydrophobic |
| C16 | CD1 | ILE- 111 | 3.59 | 0 | Hydrophobic |
| C4 | CD1 | TYR- 112 | 3.96 | 0 | Hydrophobic |
| C18 | CD1 | LEU- 138 | 3.46 | 0 | Hydrophobic |
| C4 | CD2 | LEU- 139 | 3.23 | 0 | Hydrophobic |
| C18 | CD2 | LEU- 139 | 4.41 | 0 | Hydrophobic |
| O1 | NZ | LYS- 162 | 2.91 | 164.63 | H-Bond (Protein Donor) |
| O1 | NE2 | HIS- 164 | 3.08 | 148.59 | H-Bond (Protein Donor) |
| C17 | CB | LEU- 201 | 4.22 | 0 | Hydrophobic |
| C19 | CD2 | LEU- 201 | 3.63 | 0 | Hydrophobic |
| C16 | CD2 | LEU- 203 | 4.41 | 0 | Hydrophobic |
| C19 | CE2 | TYR- 298 | 3.37 | 0 | Hydrophobic |
| C19 | CD1 | ILE- 303 | 3.99 | 0 | Hydrophobic |
| C14 | CE1 | PHE- 310 | 3.71 | 0 | Hydrophobic |