1.900 Å
X-ray
2012-02-16
Name: | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A |
---|---|
ID: | PDE10_HUMAN |
AC: | Q9Y233 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 3.1.4.17 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 26.928 |
---|---|
Number of residues: | 22 |
Including | |
Standard Amino Acids: | 20 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.974 | 698.625 |
% Hydrophobic | % Polar |
---|---|
53.62 | 46.38 |
According to VolSite |
HET Code: | F03 |
---|---|
Formula: | C10H9N3O2 |
Molecular weight: | 203.197 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 56.82 % |
Polar Surface area: | 70.56 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
20.8915 | -13.4105 | -34.9264 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C10 | CD2 | LEU- 675 | 3.82 | 0 | Hydrophobic |
C12 | CB | SER- 677 | 4.31 | 0 | Hydrophobic |
C12 | CG1 | VAL- 678 | 3.61 | 0 | Hydrophobic |
C12 | CD1 | ILE- 692 | 3.31 | 0 | Hydrophobic |
C1 | SD | MET- 713 | 3.47 | 0 | Hydrophobic |
N4 | OE1 | GLN- 726 | 2.92 | 166.37 | H-Bond (Ligand Donor) |
N15 | NE2 | GLN- 726 | 3.36 | 150.26 | H-Bond (Protein Donor) |
C1 | CB | PHE- 729 | 4.04 | 0 | Hydrophobic |