2.500 Å
X-ray
2012-03-20
Name: | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A |
---|---|
ID: | PDE9A_HUMAN |
AC: | O76083 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 32.304 |
---|---|
Number of residues: | 31 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 2 |
Cofactors: | |
Metals: | ZN MG |
Ligandability | Volume (Å3) |
---|---|
1.002 | 786.375 |
% Hydrophobic | % Polar |
---|---|
51.93 | 48.07 |
According to VolSite |
HET Code: | 7RG |
---|---|
Formula: | C20H26N7O2 |
Molecular weight: | 396.466 g/mol |
DrugBank ID: | DB11953 |
Buried Surface Area: | 46.08 % |
Polar Surface area: | 98.73 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 2 |
Rings: | 5 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
75.5261 | 52.2053 | 40.5994 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C28 | CE2 | PHE- 251 | 4.26 | 0 | Hydrophobic |
C25 | CG | MET- 365 | 3.69 | 0 | Hydrophobic |
C24 | CG2 | ILE- 403 | 4.02 | 0 | Hydrophobic |
C29 | CG1 | VAL- 417 | 3.96 | 0 | Hydrophobic |
C27 | CD1 | LEU- 420 | 4.42 | 0 | Hydrophobic |
C23 | CD2 | LEU- 420 | 3.87 | 0 | Hydrophobic |
C15 | CD2 | LEU- 420 | 3.8 | 0 | Hydrophobic |
C29 | CD2 | LEU- 421 | 3.88 | 0 | Hydrophobic |
C15 | CE2 | TYR- 424 | 3.97 | 0 | Hydrophobic |
C29 | CB | ALA- 452 | 4.04 | 0 | Hydrophobic |
O6 | NE2 | GLN- 453 | 2.94 | 171.12 | H-Bond (Protein Donor) |
N7 | OE1 | GLN- 453 | 2.63 | 166.86 | H-Bond (Ligand Donor) |
C11 | CG | PHE- 456 | 4.27 | 0 | Hydrophobic |
C24 | CZ | PHE- 456 | 4.4 | 0 | Hydrophobic |
O6 | O | HOH- 1042 | 2.86 | 161.57 | H-Bond (Protein Donor) |