1.900 Å
X-ray
2004-03-25
| Name: | 4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1, chloroplastic |
|---|---|
| ID: | HGGL1_MAIZE |
| AC: | P49235 |
| Organism: | Zea mays |
| Reign: | Eukaryota |
| TaxID: | 4577 |
| EC Number: | 3.2.1.182 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 19.848 |
|---|---|
| Number of residues: | 24 |
| Including | |
| Standard Amino Acids: | 22 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.882 | 870.750 |
| % Hydrophobic | % Polar |
|---|---|
| 58.91 | 41.09 |
| According to VolSite | |

| HET Code: | NTZ |
|---|---|
| Formula: | C6H10N4O4 |
| Molecular weight: | 202.168 g/mol |
| DrugBank ID: | DB02471 |
| Buried Surface Area: | 56.14 % |
| Polar Surface area: | 124.52 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 4 |
| Rings: | 2 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| 22.3404 | 54.6701 | -0.484214 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2 | OG1 | THR- 194 | 2.95 | 166.89 | H-Bond (Ligand Donor) |
| C2 | CG2 | THR- 194 | 3.54 | 0 | Hydrophobic |
| C6 | CE1 | PHE- 198 | 4 | 0 | Hydrophobic |
| C4 | CZ | PHE- 205 | 4.14 | 0 | Hydrophobic |
| C3 | CZ2 | TRP- 378 | 4.2 | 0 | Hydrophobic |
| C5 | CE2 | TRP- 378 | 3.74 | 0 | Hydrophobic |
| O4 | OE2 | GLU- 464 | 3.3 | 120.91 | H-Bond (Ligand Donor) |
| C6 | CZ | PHE- 466 | 3.63 | 0 | Hydrophobic |