1.950 Å
X-ray
2006-03-07
| Name: | Methionine aminopeptidase 2 |
|---|---|
| ID: | MAP2_HUMAN |
| AC: | P50579 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 18.904 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 30 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MN MN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.951 | 421.875 |
| % Hydrophobic | % Polar |
|---|---|
| 57.60 | 42.40 |
| According to VolSite | |

| HET Code: | A19 |
|---|---|
| Formula: | C13H8BrClNO4S |
| Molecular weight: | 389.629 g/mol |
| DrugBank ID: | DB07309 |
| Buried Surface Area: | 65.49 % |
| Polar Surface area: | 94.68 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 1 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| 16.8998 | 29.6492 | 18.2254 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CL1 | CB | ALA- 230 | 3.44 | 0 | Hydrophobic |
| O20 | NE2 | HIS- 231 | 2.99 | 167.48 | H-Bond (Protein Donor) |
| CL1 | CD1 | LEU- 328 | 3.7 | 0 | Hydrophobic |
| C2 | CD2 | LEU- 328 | 3.68 | 0 | Hydrophobic |
| C13 | CG2 | ILE- 338 | 3.74 | 0 | Hydrophobic |
| C17 | CG1 | ILE- 338 | 3.9 | 0 | Hydrophobic |
| C13 | CB | HIS- 339 | 4.22 | 0 | Hydrophobic |
| CL1 | CZ | PHE- 366 | 3.53 | 0 | Hydrophobic |
| C14 | CE | MET- 384 | 3.91 | 0 | Hydrophobic |
| BR18 | CB | ALA- 414 | 3.8 | 0 | Hydrophobic |
| BR18 | CG | TYR- 444 | 3.89 | 0 | Hydrophobic |
| C3 | CD1 | LEU- 447 | 3.85 | 0 | Hydrophobic |
| O21 | MN | MN- 481 | 2.45 | 0 | Metal Acceptor |