Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Protein Data Bank Entry:

2ouy

1.900 Å

X-ray

2007-02-12

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A
ID:PDE10_HUMAN
AC:Q9Y233
Organism:Homo sapiens
Reign:Eukaryota
TaxID:9606
EC Number:3.1.4.17


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:20.694
Number of residues:29
Including
Standard Amino Acids: 26
Non Standard Amino Acids: 2
Water Molecules: 1
Cofactors:
Metals: ZN MG

Cavity properties

LigandabilityVolume (Å3)
1.018664.875

% Hydrophobic% Polar
54.8245.18
According to VolSite

Ligand :
2ouy_1 Structure
HET Code: CMP
Formula: C10H11N5O6P
Molecular weight: 328.198 g/mol
DrugBank ID: DB02527
Buried Surface Area:47.3 %
Polar Surface area: 167.48 Å2
Number of
H-Bond Acceptors: 10
H-Bond Donors: 2
Rings: 4
Aromatic rings: 2
Anionic atoms: 1
Cationic atoms: 0
Rule of Five Violation: 1
Rotatable Bonds: 1

Mass center Coordinates

XYZ
5.2036410.92243.4322


Binding mode :
What is Poseview ?
  • 2D View
  • 3D View
Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
O2PNE2HIS- 5252.5149.88H-Bond
(Ligand Donor)
C1'CD2LEU- 6354.250Hydrophobic
C4'CD2LEU- 6353.520Hydrophobic
C5'CD2LEU- 6753.560Hydrophobic
C2'CZPHE- 6963.450Hydrophobic
N7NE2GLN- 7263.07157.88H-Bond
(Protein Donor)
N6OE1GLN- 7262.73139.54H-Bond
(Ligand Donor)
C1'CE1PHE- 7293.440Hydrophobic