1.900 Å
X-ray
2007-02-12
Name: | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A |
---|---|
ID: | PDE10_HUMAN |
AC: | Q9Y233 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 3.1.4.17 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 20.694 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 26 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | ZN MG |
Ligandability | Volume (Å3) |
---|---|
1.018 | 664.875 |
% Hydrophobic | % Polar |
---|---|
54.82 | 45.18 |
According to VolSite |
HET Code: | CMP |
---|---|
Formula: | C10H11N5O6P |
Molecular weight: | 328.198 g/mol |
DrugBank ID: | DB02527 |
Buried Surface Area: | 47.3 % |
Polar Surface area: | 167.48 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 10 |
H-Bond Donors: | 2 |
Rings: | 4 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
5.20364 | 10.922 | 43.4322 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2P | NE2 | HIS- 525 | 2.5 | 149.88 | H-Bond (Ligand Donor) |
C1' | CD2 | LEU- 635 | 4.25 | 0 | Hydrophobic |
C4' | CD2 | LEU- 635 | 3.52 | 0 | Hydrophobic |
C5' | CD2 | LEU- 675 | 3.56 | 0 | Hydrophobic |
C2' | CZ | PHE- 696 | 3.45 | 0 | Hydrophobic |
N7 | NE2 | GLN- 726 | 3.07 | 157.88 | H-Bond (Protein Donor) |
N6 | OE1 | GLN- 726 | 2.73 | 139.54 | H-Bond (Ligand Donor) |
C1' | CE1 | PHE- 729 | 3.44 | 0 | Hydrophobic |