Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4y17LAETranscriptional regulator of ftsQAZ gene cluster

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4y17LAETranscriptional regulator of ftsQAZ gene cluster/1.000
2avxHTFRegulatory protein SdiA/0.557
2cekN8TAcetylcholinesterase3.1.1.70.525
1ut6A8NAcetylcholinesterase3.1.1.70.490
2flhZEACytokinin-specific binding protein/0.490
1jwtBLIProthrombin3.4.21.50.488
3rsv3RSBeta-secretase 13.4.23.460.488
3h3qH13Collagen type IV alpha-3-binding protein/0.487
1nzq162Prothrombin3.4.21.50.486
2xufTZ4Acetylcholinesterase3.1.1.70.486
4a83DXCMajor pollen allergen Bet v 1-A/0.485
1odcA8BAcetylcholinesterase3.1.1.70.483
1zgbA1EAcetylcholinesterase3.1.1.70.483
4q0kGA3Phytohormone-binding protein/0.481
3dysIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.480
4m9aFDAAcyl-CoA dehydrogenase/0.480
1rsgFADPolyamine oxidase FMS1/0.479
4x7zZM3Mycinamicin III 3''-O-methyltransferase2.1.1.2370.479
1xddAAYIntegrin alpha-L/0.478
2xugTZ4Acetylcholinesterase3.1.1.70.478
1qrsATPGlutamine--tRNA ligase6.1.1.180.477
3qj0QI3Botulinum neurotoxin type A3.4.24.690.477
4bfzZVZPantothenate kinase2.7.1.330.477
4g2l0WLHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.477
4nieNBHNuclear receptor ROR-gamma/0.477
5cmx0G6Prothrombin3.4.21.50.477
2yy2IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.476
4iae1DXAlr2278 protein/0.476
2rqfJH3Hemolymph juvenile hormone binding protein/0.475
4a81DXCMajor pollen allergen Bet v 1-A/0.475
1ypeUIPProthrombin3.4.21.50.474
2xupTZ5Acetylcholinesterase3.1.1.70.474
3dyqPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.473
1yplRA8Prothrombin3.4.21.50.472
2qimZEAClass 10 plant pathogenesis-related protein/0.472
2xukTZ5Acetylcholinesterase3.1.1.70.472
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.472
4arbC57Acetylcholinesterase3.1.1.70.472
1rz1NADPhenol 2-hydroxylase component B/0.471
1zgcA2EAcetylcholinesterase3.1.1.70.471
2jf0HBPAcetylcholinesterase3.1.1.70.471
3dyqIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.469
4zzi1NSNAD-dependent protein deacetylase sirtuin-13.5.10.469
2g1y5IGRenin3.4.23.150.468
1eveE20Acetylcholinesterase3.1.1.70.467
3jpuTY4Transcriptional activator protein LasR/0.467
4m0f1YKAcetylcholinesterase3.1.1.70.467
1ypgUIRProthrombin3.4.21.50.466
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.466
3ix4TX1Transcriptional activator protein LasR/0.466
4b7zQ4QAcetylcholinesterase3.1.1.70.466
4mrm2BYGamma-aminobutyric acid type B receptor subunit 1/0.466
3zvmADPBifunctional polynucleotide phosphatase/kinase2.7.1.780.465
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.465
4gi2NAPCrotonyl-CoA carboxylase/reductase/0.465
4iah1DXAlr2278 protein/0.465
4psbGA3Cytokinin-specific binding protein/0.465
1xl8152Peroxisomal carnitine O-octanoyltransferase2.3.1.1370.464
2dvlFADAcyl-CoA dehydrogenase/0.464
2h3wHC5Carnitine O-acetyltransferase2.3.1.70.464
1hb1OCVIsopenicillin N synthase1.21.3.10.463
1i5rHYCEstradiol 17-beta-dehydrogenase 11.1.1.620.463
1kyxCRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.463
1x8lOXRRetinol dehydratase/0.463
2ckmAA7Acetylcholinesterase3.1.1.70.463
2dxiATPGlutamate--tRNA ligase6.1.1.170.463
1ry0PG2Aldo-keto reductase family 1 member C3/0.462
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.462
4a84DXCMajor pollen allergen Bet v 1-A/0.462
4ax9N5NProthrombin3.4.21.50.462
4n3r2GUTankyrase-12.4.2.300.462
2jl1NAPTriphenylmethane reductase/0.461
2xuhTZ4Acetylcholinesterase3.1.1.70.461
3c1kT15Prothrombin3.4.21.50.461
1h22E10Acetylcholinesterase3.1.1.70.460
1t4v14AProthrombin3.4.21.50.460
3zoiM2WIsopenicillin N synthase1.21.3.10.460
4bfuZVUPantothenate kinase2.7.1.330.460
1je1GMPPurine nucleoside phosphorylase/0.459
1qjfACSIsopenicillin N synthase1.21.3.10.459
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.459
2gv8NDPThiol-specific monooxygenase1.14.130.459
2r2mI50Prothrombin3.4.21.50.459
1eioGCHGastrotropin/0.458
1vf3GDNGlutathione S-transferase 32.5.1.180.458
2pnuENMAndrogen receptor/0.458
2stdCRPScytalone dehydratase4.2.1.940.458
3gncQQQGlutaryl-CoA dehydrogenase/0.458
3hatGLY_VAL_ARG_RNGProthrombin3.4.21.50.458
3mjrAC2Deoxycytidine kinase2.7.1.740.458
4xbjIN5Alanine racemase, biosynthetic/0.458
1d3pBT3Prothrombin3.4.21.50.457
1x1bSAHC-20 methyltransferase/0.457
2g1o2IGRenin3.4.23.150.457
2lfoGCHFatty acid-binding protein, liver/0.457
3jswJARHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.457
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.457
4b4w9L9Bifunctional protein FolD/0.457
1gg5E09NAD(P)H dehydrogenase [quinone] 11.6.5.20.456
1o6qR17Squalene--hopene cyclase4.2.1.1290.456
1p91SAM23S rRNA (guanine(745)-N(1))-methyltransferase/0.456
1yhjR6CPyridoxal kinase2.7.1.350.456
3e6eDCSAlanine racemase/0.456
4gh6LUOHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.456
4x7uZM3Mycinamicin III 3''-O-methyltransferase2.1.1.2370.456
5c1gGDUHisto-blood group ABO system transferase/0.456
1c7oPPGHemolysin/0.455
1fxuGU7Purine nucleoside phosphorylase2.4.2.10.455
1ygjRMCPyridoxal kinase2.7.1.350.455
2jb4A14Isopenicillin N synthase1.21.3.10.455
3pn1IVHDNA ligase/0.455
3qi4IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.455
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.455
4b1e6T6Beta-secretase 13.4.23.460.455
4d2dALA_ALA_ALADi-or tripeptide:H+ symporter/0.455
4ge90L0Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.455
1u65CP0Acetylcholinesterase3.1.1.70.454
2fxuBIDActin, alpha skeletal muscle/0.454
2j3qTFLAcetylcholinesterase3.1.1.70.454
2j9fTHV2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial1.2.4.40.454
2j9fTHV2-oxoisovalerate dehydrogenase subunit beta, mitochondrial1.2.4.40.454
2w6cBM4Acetylcholinesterase3.1.1.70.454
3h3r14HCollagen type IV alpha-3-binding protein/0.454
3v2uATPProtein GAL3/0.454
4e2zJHZMethyltransferase/0.454
4e907RGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.454
4zj8SUVOrexin receptor type 1/0.454
1mu6CDAProthrombin3.4.21.50.453
2cv2GSUGlutamate--tRNA ligase6.1.1.170.453
2uuk897Prothrombin3.4.21.50.453
2weyEV1cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.453
2xujTZ5Acetylcholinesterase3.1.1.70.453
3dylIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.453
3h3t16HCollagen type IV alpha-3-binding protein/0.453
3oadLPORenin3.4.23.150.453
3own3OWRenin3.4.23.150.453
4bfyZVYPantothenate kinase2.7.1.330.453
1h60STRPentaerythritol tetranitrate reductase/0.452
1q20PLOSulfotransferase family cytosolic 2B member 12.8.2.20.452
2fs4PZ1Renin3.4.23.150.452
2i65NADADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 13.2.2.60.452
2vbdV10Isopenicillin N synthase1.21.3.10.452
3ha7B32Hydroxymycolate synthase MmaA42.1.10.452
3nmpPYVAbscisic acid receptor PYL2/0.452
3tfuPL8Adenosylmethionine-8-amino-7-oxononanoate aminotransferase2.6.1.620.452
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.452
4eqrCOACoenzyme A disulfide reductase/0.452
4glx0XSDNA ligase6.5.1.20.452
4ms1381Gamma-aminobutyric acid type B receptor subunit 1/0.452
1dtpAPUDiphtheria toxin/0.451
1fm4DXCMajor pollen allergen Bet v 1-L/0.451
3jsiWTCHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.451
3qiyQI1Botulinum neurotoxin type A3.4.24.690.451
4araC56Acetylcholinesterase3.1.1.70.451
4bb3KKAIsopenicillin N synthase1.21.3.10.451
4f1l0RYPoly [ADP-ribose] polymerase 142.4.2.300.451
4iarERM5-hydroxytryptamine receptor 1B/0.451
1d6w00RProthrombin3.4.21.50.450
1ddtAPUDiphtheria toxin/0.450
1eyyNAPNADP-dependent fatty aldehyde dehydrogenase1.2.1.40.450
1gm9SOXPenicillin G acylase3.5.1.110.450
1ib0FADNADH-cytochrome b5 reductase 31.6.2.20.450
1nm6L86Prothrombin3.4.21.50.450
2c1zKMPAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.450
2e9aB28Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.450
4bfxZVXPantothenate kinase2.7.1.330.450
4mlp2CXCryptochrome-2/0.450
4zu44TGWxcM-like protein/0.450
2jbsFMNp-hydroxyphenylacetate 3-hydroxylase, oxygenase component/0.449
2vf3GVS4-diphosphocytidyl-2-C-methyl-D-erythritol kinase/0.449
3b9oFMNAlkane monoxygenase/0.449
3ckqUPGGlucosyl-3-phosphoglycerate synthase2.4.1.2660.449
3eu5GBOProtein farnesyltransferase subunit beta2.5.1.580.449
3qp8HL0Transcriptional activator, LuxR/UhpA family of regulators/0.449
3rgaILDEpoxide hydrolase LasB5.5.10.449
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.449
4boeCLRJapanin/0.449
4pabTHGDimethylglycine dehydrogenase, mitochondrial1.5.8.40.449
1wuaAP8Actin, alpha skeletal muscle/0.448
2c1bCQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.448
2ed4NAD4-hydroxyphenylacetate 3-monooxygenase reductase component1.5.1.360.448
2g1r3IGRenin3.4.23.150.448
2g25TDKPyruvate dehydrogenase E1 component1.2.4.10.448
2jj8AZZDeoxynucleoside kinase/0.448
2zbaZBATrichothecene 3-O-acetyltransferase/0.448
2zhe13UProthrombin3.4.21.50.448
3oagLPQRenin3.4.23.150.448
4do30LAFatty-acid amide hydrolase 13.5.1.990.448
4eqsCOACoenzyme A disulfide reductase/0.448
4ey7E20Acetylcholinesterase3.1.1.70.448
1enoNADEnoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic1.3.1.90.447
1h36R88Squalene--hopene cyclase4.2.1.1290.447
1obnASVIsopenicillin N synthase1.21.3.10.447
1q23FUAChloramphenicol acetyltransferase2.3.1.280.447
2zhf49UProthrombin3.4.21.50.447
3q43D66M1 family aminopeptidase3.4.110.447
3vtdTKDVitamin D3 receptor/0.447
3zbrNAP2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.447
4ey6GNTAcetylcholinesterase3.1.1.70.447
4rlh0WEEnoyl-[acyl-carrier-protein] reductase [NADH]/0.447
5bv3M7Gm7GpppX diphosphatase3.6.1.590.447
5stdUNNScytalone dehydratase4.2.1.940.447
7stdCRPScytalone dehydratase4.2.1.940.447
5d6lCAUBeta-2 adrenergic receptor/0.447
1d3dBZTProthrombin3.4.21.50.446
1qtiGNTAcetylcholinesterase3.1.1.70.446
1w6rGNTAcetylcholinesterase3.1.1.70.446
1w76GNTAcetylcholinesterase3.1.1.70.446
1z6tADPApoptotic protease-activating factor 1/0.446
2xuiTZ5Acetylcholinesterase3.1.1.70.446
3owaFADAcyl-CoA dehydrogenase/0.446
3w0uHPWLactoylglutathione lyase4.4.1.50.446
3wqmB29Diterpene synthase3.1.7.80.446
4esoNAPPutative oxidoreductase/0.446
1bk0ACVIsopenicillin N synthase1.21.3.10.445
1fx9MJIPhospholipase A2, major isoenzyme3.1.1.40.445
1nqvLMZ6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.445
1ppjANYCytochrome b/0.445
1ygkRRCPyridoxal kinase2.7.1.350.445
2yp0OVE2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.445
3fktSIIBeta-secretase 13.4.23.460.445
3n3zIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.445
3qe2FMNNADPH--cytochrome P450 reductase/0.445
3r7kFDAProbable acyl CoA dehydrogenase/0.445
1fapRAPPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.444
1fapRAPSerine/threonine-protein kinase mTOR2.7.11.10.444
1q83TZ5Acetylcholinesterase3.1.1.70.444
1qtqQSIGlutamine--tRNA ligase6.1.1.180.444
2a0xDIHPurine nucleoside phosphorylase2.4.2.10.444
2g1n1IGRenin3.4.23.150.444
3da24MDCarbonic anhydrase 134.2.1.10.444
3k1wBFXRenin3.4.23.150.444
3u57DH8Raucaffricine-O-beta-D-glucosidase3.2.1.1250.444
4a8v2ANMajor pollen allergen Bet v 1-J/0.444
4nqgCZHMitrocomin/0.444
1w4lGL8Acetylcholinesterase3.1.1.70.443
1xoqROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.443
2bu9HFVIsopenicillin N synthase1.21.3.10.443
2iviACWIsopenicillin N synthase1.21.3.10.443
2yphQQY2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.443
3bv7NAP3-oxo-5-beta-steroid 4-dehydrogenase/0.443
3cotSTR3-oxo-5-beta-steroid 4-dehydrogenase/0.443
3g72A6TRenin3.4.23.150.443
3u9fCLMChloramphenicol acetyltransferase2.3.1.280.443
4bftZVTPantothenate kinase2.7.1.330.443
1cjvFOKAdenylate cyclase type 2/0.442
1cjvFOKAdenylate cyclase type 5/0.442
1hb3SCVIsopenicillin N synthase1.21.3.10.442
1hfqMOTDihydrofolate reductase1.5.1.30.442
1pq944BOxysterols receptor LXR-beta/0.442
1pwyAC2Purine nucleoside phosphorylase2.4.2.10.442
1rneC60Renin3.4.23.150.442
2hpvFMNFMN-dependent NADH-azoreductase1.70.442
2po7CHDFerrochelatase, mitochondrial4.99.1.10.442
2rd2QSIGlutamine--tRNA ligase6.1.1.180.442
2uxoTACHTH-type transcriptional regulator TtgR/0.442
3c3xNAPEugenol synthase 11.1.1.3180.442
3jsxCC2NAD(P)H dehydrogenase [quinone] 11.6.5.20.442
3uzxAOX3-oxo-5-beta-steroid 4-dehydrogenase/0.442
3ziaADPATP synthase subunit beta, mitochondrial3.6.3.140.442
2rh1CAUBeta-2 adrenergic receptor/0.442
1c4uIH1Prothrombin3.4.21.50.441
1dx6GNTAcetylcholinesterase3.1.1.70.441
1el4CTZObelin/0.441
1qipGNBLactoylglutathione lyase4.4.1.50.441
1r5hAO2Methionine aminopeptidase 2/0.441
1tcoFK5Peptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.441
1tcoFK5Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform3.1.3.160.441
2f99AKVAklanonic acid methyl ester cyclase AcmA5.5.1.230.441
3c14FOKAdenylate cyclase type 2/0.441
3c14FOKAdenylate cyclase type 5/0.441
3g0yP9A3-oxoacyl-[acyl-carrier-protein] synthase 22.3.1.1790.441
3jusBCDLanosterol 14-alpha demethylase1.14.13.700.441
3k3hBYEHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.441
3nu03TUDihydrofolate reductase1.5.1.30.441
4b1rITCTetracycline repressor protein class D/0.441
4j0v1H7Beta-secretase 13.4.23.460.441
4xoqF42Coenzyme F420:L-glutamate ligase/0.441
1fxfMJIPhospholipase A2, major isoenzyme3.1.1.40.440
1if5FBTCarbonic anhydrase 24.2.1.10.440
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.440
1qiqACCIsopenicillin N synthase1.21.3.10.440
1rpwDIDHTH-type transcriptional regulator QacR/0.440
2a4xBLMMitomycin-binding protein/0.440
2nr4FMNConserved protein/0.440
2x06NADL-sulfolactate dehydrogenase/0.440
2xiq5ADMethylmalonyl-CoA mutase, mitochondrial/0.440
3b4yF42F420-dependent glucose-6-phosphate dehydrogenase/0.440
3clxX22E3 ubiquitin-protein ligase XIAP6.3.20.440
3k3ePDBHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.440
3rpnGTXGlutathione S-transferase kappa 12.5.1.180.440
3s5wFADL-ornithine N(5)-monooxygenase/0.440
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.440
4kq6DLZ6,7-dimethyl-8-ribityllumazine synthase/0.440
4wdgA2P2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.440