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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

1cjv

3.000 Å

X-ray

1999-04-19

Molecular Function:
Binding Site :

Uniprot Annotation

Name:Adenylate cyclase type 2Adenylate cyclase type 5
ID:ADCY2_RATADCY5_CANLF
AC:P26769P30803
Organism:Rattus norvegicusCanis lupus familiaris
Reign:Eukaryota
TaxID:101169615
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
A58 %
B42 %


Ligand binding site composition:

B-Factor:23.363
Number of residues:26
Including
Standard Amino Acids: 26
Non Standard Amino Acids: 0
Water Molecules: 0
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
0.735756.000

% Hydrophobic% Polar
40.1859.82
According to VolSite

Ligand :
1cjv_1 Structure
HET Code: FOK
Formula: C22H34O7
Molecular weight: 410.501 g/mol
DrugBank ID: DB02587
Buried Surface Area:54.59 %
Polar Surface area: 113.29 Å2
Number of
H-Bond Acceptors: 7
H-Bond Donors: 3
Rings: 3
Aromatic rings: 0
Anionic atoms: 0
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 3

Mass center Coordinates

XYZ
43.2323-11.064850.4473


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C19CE1PHE- 3944.140Hydrophobic
C2CZPHE- 3943.850Hydrophobic
C18CD1LEU- 4383.870Hydrophobic
C2CE2TYR- 4433.810Hydrophobic
C3CZTYR- 4433.80Hydrophobic
O2OVAL- 5062.78174.55H-Bond
(Ligand Donor)
C12CBTRP- 5074.080Hydrophobic
O7NSER- 5083.41172.92H-Bond
(Protein Donor)
C20CG1VAL- 5114.260Hydrophobic
C1CG1VAL- 5113.720Hydrophobic
C17CG2THR- 5123.910Hydrophobic
C19CBASN- 5154.190Hydrophobic
C20CBASN- 5154.420Hydrophobic
C16CD2TYR- 8993.640Hydrophobic
C18CG2ILE- 9403.690Hydrophobic
O5NSER- 9423.22154.94H-Bond
(Protein Donor)