scPDB - 3ix4 entry

Protein Data Bank Entry:

PDB ID : 3ix4

Resolution :1.800 Å

Experimental Method : X-ray

Deposition Date : 2009-09-03

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Transcriptional activator protein LasR
ID:	LASR_PSEAE
AC:	P25084
Organism:	Pseudomonas aeruginosa
Reign:	Bacteria
TaxID:	208964
EC Number:	/

Chains:

Chain Name:	Percentage of Residues within binding site
G	100 %

Ligand binding site composition:

B-Factor:	15.262
Number of residues:	42
Including
Standard Amino Acids:	42
Non Standard Amino Acids:	0
Water Molecules:	0
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
1.340	489.375

% Hydrophobic	% Polar
63.45	36.55
According to VolSite

Ligand :

HET Code:	TX1
Formula:	C21H13Br2ClN2O5
Molecular weight:	568.599 g/mol
DrugBank ID:	-
Buried Surface Area:	79.22 %
Polar Surface area:	101.22 Å2

Number of
H-Bond Acceptors:	5
H-Bond Donors:	1
Rings:	3
Aromatic rings:	3
Anionic atoms:	1
Cationic atoms:	1
Rule of Five Violation:	2
Rotatable Bonds:	7

Mass center Coordinates

X	Y	Z
35.6628	28.3217	-45.7918

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
BR24	CD1	LEU- 36	3.85	0	Hydrophobic	false
C4	CD1	LEU- 36	3.69	0	Hydrophobic	false
C1	CD2	LEU- 36	4.14	0	Hydrophobic	false
C29	CD1	LEU- 40	4.37	0	Hydrophobic	false
CL31	CG	LEU- 40	4.12	0	Hydrophobic	false
BR23	CB	TYR- 47	4.21	0	Hydrophobic	false
CL31	CD2	TYR- 47	4.32	0	Hydrophobic	false
CL31	CB	ALA- 50	3.4	0	Hydrophobic	false
BR23	CD1	ILE- 52	3.99	0	Hydrophobic	false
O17	OH	TYR- 56	2.8	154.41	H-Bond (Protein Donor)	false
BR24	CD1	TYR- 56	3.87	0	Hydrophobic	false
O18	NE1	TRP- 60	3.05	130.75	H-Bond (Protein Donor)	false
O19	NE1	TRP- 60	3.18	156.9	H-Bond (Protein Donor)	false
BR24	CG	ARG- 61	4.04	0	Hydrophobic	false
C4	CB	TYR- 64	4.44	0	Hydrophobic	false
BR23	CE2	TYR- 64	4.28	0	Hydrophobic	false
BR24	CD1	TYR- 64	3.56	0	Hydrophobic	false
DuAr	DuAr	TYR- 64	3.7	0	Aromatic Face/Face	false
N8	OD2	ASP- 73	2.74	162.84	H-Bond (Ligand Donor)	false
C11	CG2	THR- 75	3.56	0	Hydrophobic	false
C26	CG2	VAL- 76	4.11	0	Hydrophobic	false
C27	CG1	VAL- 76	4.43	0	Hydrophobic	false
C27	CB	CYS- 79	3.91	0	Hydrophobic	false
DuAr	DuAr	TRP- 88	3.89	0	Aromatic Face/Face	false
C14	CB	ALA- 105	3.95	0	Hydrophobic	false
C28	CG	LEU- 125	3.92	0	Hydrophobic	false
C26	CB	ALA- 127	3.55	0	Hydrophobic	false
O17	OG	SER- 129	3.2	140.91	H-Bond (Protein Donor)	false