1.400 Å
X-ray
2005-06-30
| Name: | Mitomycin-binding protein |
|---|---|
| ID: | O05205_STRLA |
| AC: | O05205 |
| Organism: | Streptomyces lavendulae |
| Reign: | Bacteria |
| TaxID: | 1914 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 59 % |
| B | 41 % |
| B-Factor: | 17.581 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 32 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.855 | 570.375 |
| % Hydrophobic | % Polar |
|---|---|
| 57.40 | 42.60 |
| According to VolSite | |

| HET Code: | BLM |
|---|---|
| Formula: | C55H86N17O21S3 |
| Molecular weight: | 1417.568 g/mol |
| DrugBank ID: | DB00290 |
| Buried Surface Area: | 43.57 % |
| Polar Surface area: | 692.33 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 28 |
| H-Bond Donors: | 21 |
| Rings: | 6 |
| Aromatic rings: | 4 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 36 |
| X | Y | Z |
|---|---|---|
| 10.002 | 7.0031 | 27.6738 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C54 | CB | ALA- 74 | 4.22 | 0 | Hydrophobic |
| NL | OE2 | GLU- 78 | 3.66 | 0 | Ionic (Ligand Cationic) |
| NL | OE1 | GLU- 78 | 3.59 | 0 | Ionic (Ligand Cationic) |
| S43 | CB | TRP- 108 | 4.09 | 0 | Hydrophobic |
| O40 | NE2 | GLN- 110 | 2.99 | 163.78 | H-Bond (Protein Donor) |
| C55 | CD1 | ILE- 114 | 3.77 | 0 | Hydrophobic |
| C54 | CD1 | ILE- 114 | 4.04 | 0 | Hydrophobic |
| S53 | CD1 | ILE- 114 | 4.45 | 0 | Hydrophobic |
| C54 | CG1 | VAL- 122 | 3.47 | 0 | Hydrophobic |
| C52 | CD1 | TYR- 260 | 4.33 | 0 | Hydrophobic |
| C55 | CB | TYR- 260 | 4.37 | 0 | Hydrophobic |