1.400 Å
X-ray
2005-06-30
Name: | Mitomycin-binding protein |
---|---|
ID: | O05205_STRLA |
AC: | O05205 |
Organism: | Streptomyces lavendulae |
Reign: | Bacteria |
TaxID: | 1914 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 59 % |
B | 41 % |
B-Factor: | 17.581 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.855 | 570.375 |
% Hydrophobic | % Polar |
---|---|
57.40 | 42.60 |
According to VolSite |
HET Code: | BLM |
---|---|
Formula: | C55H86N17O21S3 |
Molecular weight: | 1417.568 g/mol |
DrugBank ID: | DB00290 |
Buried Surface Area: | 43.57 % |
Polar Surface area: | 692.33 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 28 |
H-Bond Donors: | 21 |
Rings: | 6 |
Aromatic rings: | 4 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 36 |
X | Y | Z |
---|---|---|
10.002 | 7.0031 | 27.6738 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C54 | CB | ALA- 74 | 4.22 | 0 | Hydrophobic |
NL | OE2 | GLU- 78 | 3.66 | 0 | Ionic (Ligand Cationic) |
NL | OE1 | GLU- 78 | 3.59 | 0 | Ionic (Ligand Cationic) |
S43 | CB | TRP- 108 | 4.09 | 0 | Hydrophobic |
O40 | NE2 | GLN- 110 | 2.99 | 163.78 | H-Bond (Protein Donor) |
C55 | CD1 | ILE- 114 | 3.77 | 0 | Hydrophobic |
C54 | CD1 | ILE- 114 | 4.04 | 0 | Hydrophobic |
S53 | CD1 | ILE- 114 | 4.45 | 0 | Hydrophobic |
C54 | CG1 | VAL- 122 | 3.47 | 0 | Hydrophobic |
C52 | CD1 | TYR- 260 | 4.33 | 0 | Hydrophobic |
C55 | CB | TYR- 260 | 4.37 | 0 | Hydrophobic |