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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

2jf0

2.500 Å

X-ray

2007-01-25

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Acetylcholinesterase
ID:ACES_MOUSE
AC:P21836
Organism:Mus musculus
Reign:Eukaryota
TaxID:10090
EC Number:3.1.1.7


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:37.462
Number of residues:33
Including
Standard Amino Acids: 29
Non Standard Amino Acids: 1
Water Molecules: 3
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
0.929664.875

% Hydrophobic% Polar
56.3543.65
According to VolSite

Ligand :
2jf0_1 Structure
HET Code: HBP
Formula: C19H26N4O2
Molecular weight: 342.435 g/mol
DrugBank ID: -
Buried Surface Area:61.92 %
Polar Surface area: 72.94 Å2
Number of
H-Bond Acceptors: 4
H-Bond Donors: 2
Rings: 2
Aromatic rings: 2
Anionic atoms: 0
Cationic atoms: 2
Rule of Five Violation: 0
Rotatable Bonds: 10

Mass center Coordinates

XYZ
32.232922.625610.408


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C14CE1TYR- 723.620Hydrophobic
C11CZTYR- 1244.110Hydrophobic
C17CZ3TRP- 2863.390Hydrophobic
C11CH2TRP- 2864.150Hydrophobic
O10CD1PHE- 3382.73150.63Weak HBond LIG
C5CE2PHE- 3383.980Hydrophobic
C1CZTYR- 3413.660Hydrophobic
C5CGTYR- 3413.90Hydrophobic
C2CE1TYR- 3413.650Hydrophobic
C8CD2TYR- 3413.360Hydrophobic
O10NE2HIS- 4473.4121.74H-Bond
(Ligand Donor)
N9NE2HIS- 4473.26125.65H-Bond
(Ligand Donor)