2.050 Å
X-ray
2015-01-16
| Name: | Coenzyme F420:L-glutamate ligase |
|---|---|
| ID: | FBIB_MYCTU |
| AC: | P9WP79 |
| Organism: | Mycobacterium tuberculosis |
| Reign: | Bacteria |
| TaxID: | 83332 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 24 % |
| B | 76 % |
| B-Factor: | 28.714 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 34 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.288 | 1231.875 |
| % Hydrophobic | % Polar |
|---|---|
| 48.22 | 51.78 |
| According to VolSite | |

| HET Code: | F42 |
|---|---|
| Formula: | C29H32N5O18P |
| Molecular weight: | 769.561 g/mol |
| DrugBank ID: | DB03913 |
| Buried Surface Area: | 55.08 % |
| Polar Surface area: | 389.68 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 20 |
| H-Bond Donors: | 7 |
| Rings: | 3 |
| Aromatic rings: | 1 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 20 |
| X | Y | Z |
|---|---|---|
| 47.1552 | 17.1206 | 43.0165 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C2I | CB | HIS- 290 | 3.61 | 0 | Hydrophobic |
| C6 | CB | LYS- 316 | 4.29 | 0 | Hydrophobic |
| C7 | CD | LYS- 316 | 4.08 | 0 | Hydrophobic |
| C2' | CZ2 | TRP- 317 | 3.47 | 0 | Hydrophobic |
| C6 | CB | TRP- 317 | 3.27 | 0 | Hydrophobic |
| O8M | OD2 | ASP- 320 | 2.62 | 163.84 | H-Bond (Ligand Donor) |
| C1' | CD1 | PHE- 403 | 3.87 | 0 | Hydrophobic |
| C3' | CE1 | PHE- 403 | 3.92 | 0 | Hydrophobic |
| C9 | CB | PHE- 403 | 3.28 | 0 | Hydrophobic |