Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2wepADPATP-dependent molecular chaperone HSP82

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
2wepADPATP-dependent molecular chaperone HSP82/1.000
1am1ADPATP-dependent molecular chaperone HSP82/0.648
4ce3L4VATP-dependent molecular chaperone HSP82/0.636
4bqjXKLHeat shock protein HSP 90-alpha/0.614
3r4pFU7Heat shock protein HSP 90-alpha/0.608
3hhu819Heat shock protein HSP 90-alpha/0.597
3t10ACPHeat shock protein HSP 90-alpha/0.587
4as94QSATP-dependent molecular chaperone HSP82/0.586
1yszNECEndoplasmin/0.579
3rlr3RRHeat shock protein HSP 90-alpha/0.578
1bgqRDCATP-dependent molecular chaperone HSP82/0.577
1u0zRDCEndoplasmin/0.576
2vw5BC6ATP-dependent molecular chaperone HSP82/0.576
4fcr0TMHeat shock protein HSP 90-alpha/0.573
2yefANPHeat shock protein HSP 90-alpha/0.570
2bt0CT5Heat shock protein HSP 90-alpha/0.567
3r4nFU5Heat shock protein HSP 90-alpha/0.566
2werRDCATP-dependent molecular chaperone HSP82/0.565
2byh2D7Heat shock protein HSP 90-alpha/0.563
2gqpPA7Endoplasmin/0.563
1y4sADPChaperone protein HtpG/0.562
2xd6XD6ATP-dependent molecular chaperone HSP82/0.562
3rlq3RQHeat shock protein HSP 90-alpha/0.561
2iwuNP5ATP-dependent molecular chaperone HSP82/0.560
2qg0A94Heat shock protein HSP 90-alpha/0.560
4gqtADPHeat shock protein 90/0.560
2breKJ2ATP-dependent molecular chaperone HSP82/0.559
2xk2ADPHeat shock protein HSP 90-alpha/0.558
3ekrPY9Heat shock protein HSP 90-alpha/0.557
4ce17FKATP-dependent molecular chaperone HSP82/0.557
4xc0ACPHeat shock cognate 90 kDa protein/0.557
1u2oNECEndoplasmin/0.556
2hchN5AEndoplasmin/0.555
3hekBD0Heat shock protein HSP 90-alpha/0.554
1byqADPHeat shock protein HSP 90-alpha/0.552
1uy8PU5Heat shock protein HSP 90-alpha/0.551
2byi2DDHeat shock protein HSP 90-alpha/0.551
3t2sAGSHeat shock protein HSP 90-alpha/0.549
5f5rANPHeat shock protein 75 kDa, mitochondrial/0.549
2brcCT5ATP-dependent molecular chaperone HSP82/0.546
2wi6ZZ6Heat shock protein HSP 90-alpha/0.546
1uyfPU1Heat shock protein HSP 90-alpha/0.544
1uydPU8Heat shock protein HSP 90-alpha/0.543
3k981RCHeat shock protein HSP 90-alpha/0.543
4xcjADPHeat shock cognate 90 kDa protein/0.542
4asg814ATP-dependent molecular chaperone HSP82/0.541
1u0yPA7Endoplasmin/0.540
1yc34BCHeat shock protein HSP 90-alpha/0.540
3vhaVHAHeat shock protein HSP 90-alpha/0.540
3r4oFU3Heat shock protein HSP 90-alpha/0.539
2bz5AB4Heat shock protein HSP 90-alpha/0.538
3b28B2XHeat shock protein HSP 90-alpha/0.538
3k974CDHeat shock protein HSP 90-alpha/0.538
3o0iP54Heat shock protein HSP 90-alpha/0.537
1qy5NECEndoplasmin/0.535
4ce2BO5ATP-dependent molecular chaperone HSP82/0.535
2gfdRDAEndoplasmin/0.533
1uy7PU4Heat shock protein HSP 90-alpha/0.532
3c11GDMATP-dependent molecular chaperone HSP82/0.531
1qy8RDIEndoplasmin/0.529
2xx213CATP-dependent molecular chaperone HSP82/0.528
4egiB2JHeat shock protein HSP 90-alpha/0.528
1uymPU3Heat shock protein HSP 90-beta/0.526
2xabVHDHeat shock protein HSP 90-alpha/0.524
1uyePU9Heat shock protein HSP 90-alpha/0.522
2fwzH71Heat shock protein HSP 90-alpha/0.519
2yegXQGHeat shock protein HSP 90-alpha/0.519
4jqlVJ6Heat shock protein HSP 90-alpha/0.518
4xclAGSHeat shock cognate 90 kDa protein/0.516
3hz5Z64Heat shock protein HSP 90-alpha/0.515
2fwyH64Heat shock protein HSP 90-alpha/0.514
2xhrC0PHeat shock protein HSP 90-alpha/0.514
1uyiPUZHeat shock protein HSP 90-alpha/0.513
1amwADPATP-dependent molecular chaperone HSP82/0.512
2exlGDMEndoplasmin/0.511
1uy9PU6Heat shock protein HSP 90-alpha/0.510
4nh82LCHeat shock protein HSP 90-alpha/0.510
1uy6PU3Heat shock protein HSP 90-alpha/0.509
2ykjYKJHeat shock protein HSP 90-alpha/0.508
2hg1N5OEndoplasmin/0.507
2iwxM1SATP-dependent molecular chaperone HSP82/0.507
2xcmADPCytosolic heat shock protein 90/0.507
3t1kANPHeat shock protein HSP 90-alpha/0.507
4xdmGDMHeat shock cognate 90 kDa protein/0.507
2yee2ECHeat shock protein HSP 90-alpha/0.505
3iedAN2HSP90/0.504
4asf62UATP-dependent molecular chaperone HSP82/0.504
3whaWHAHeat shock protein HSP 90-alpha/0.503
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.501
3k99PFTHeat shock protein HSP 90-alpha/0.500
3hz142CHeat shock protein HSP 90-alpha/0.498
1yc443PHeat shock protein HSP 90-alpha/0.496
1uykPUXHeat shock protein HSP 90-alpha/0.495
2iwsNP4ATP-dependent molecular chaperone HSP82/0.495
2vwcBC2ATP-dependent molecular chaperone HSP82/0.494
2xx413IATP-dependent molecular chaperone HSP82/0.494
3ft8MOJHeat shock protein HSP 90-alpha/0.492
2ykcYKCHeat shock protein HSP 90-alpha/0.491
2cgfP2NATP-dependent molecular chaperone HSP82/0.489
2fxsRDAATP-dependent molecular chaperone HSP82/0.489
4eftEFTHeat shock protein HSP 90-alpha/0.487
2h55DZ8Heat shock protein HSP 90-alpha/0.486
2qg2A91Heat shock protein HSP 90-alpha/0.486
1uyhPU0Heat shock protein HSP 90-alpha/0.484
2bu8ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial2.7.11.20.484
3hyz42CHeat shock protein HSP 90-alpha/0.484
2fypRDEEndoplasmin/0.480
2q8iRDC[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial2.7.11.20.480
2yeiXQIHeat shock protein HSP 90-alpha/0.479
3inxJZCHeat shock protein HSP 90-alpha/0.479
2o1uANPEndoplasmin/0.478
3t0zATPHeat shock protein HSP 90-alpha/0.478
3crlANP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial2.7.11.20.477
3lzu017Gag-Pol polyprotein3.4.23.160.477
3omuIBDHeat shock protein 83/0.477
2yi5YI5Heat shock protein HSP 90-alpha/0.476
2qfoA13Heat shock protein HSP 90-alpha/0.475
2qi3MZ5Gag-Pol polyprotein/0.475
3inwJZBHeat shock protein HSP 90-alpha/0.475
3o6o94MHeat shock protein 83/0.475
5hwqCAAHydroxymethylglutaryl-CoA synthase/0.473
3sa5A69Protease/0.470
2ykeYKEHeat shock protein HSP 90-alpha/0.469
5eypLOCTubulin beta chain/0.469
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.468
2ykiYKIHeat shock protein HSP 90-alpha/0.468
1lf3EH5Plasmepsin-23.4.23.390.467
3qp0NI8Gag-Pol polyprotein3.4.23.160.467
3ogqAB1Pol polyprotein/0.466
4bqg50QHeat shock protein HSP 90-alpha/0.466
1dhrNADDihydropteridine reductase1.5.1.340.465
2ykbYKBHeat shock protein HSP 90-alpha/0.465
3tdaPN0Cytochrome P450 2D6/0.465
2rkfAB1Pol protein/0.464
3ec0GRLGag-Pol polyprotein3.4.23.470.464
4dh60KNBeta-secretase 13.4.23.460.464
4ivgANPTNF receptor-associated protein 1/0.464
3rfmCFFAdenosine receptor A2a/0.464
2qhcAB1Protease/0.463
3bva2NCGag-Pol polyprotein3.4.23.160.463
3pejBC2Endoplasmin homolog, putative/0.463
3rlp3RPHeat shock protein HSP 90-alpha/0.463
3i2l2NCProtease/0.462
1diuBDMDihydrofolate reductase1.5.1.30.461
1nhhANPDNA mismatch repair protein MutL/0.461
1uycPU7Heat shock protein HSP 90-alpha/0.461
3kddJZQGag-Pol polyprotein3.4.23.160.461
3q5kD1UHeat shock protein 83-1/0.461
1u4dDBQActivated CDC42 kinase 1/0.460
2qhyMZ1Gag-Pol polyprotein/0.460
3jvwDMPGag-Pol polyprotein3.4.23.160.460
2esaGDMEndoplasmin/0.459
2fde385Gag-Pol polyprotein3.4.23.160.459
3gggNADPrephenate dehydrogenase/0.459
3upjU03Gag-Pol polyprotein/0.459
3vt7VDXVitamin D3 receptor/0.459
1zw9H64ATP-dependent molecular chaperone HSP82/0.458
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.458
3aidARQGag-Pol polyprotein3.4.23.160.458
3ekx1UNGag-Pol polyprotein3.4.23.160.458
3so9017Pol protein/0.458
5dqrFAD7-hydroxymethyl chlorophyll a reductase, chloroplastic1.17.7.20.458
3eigMTXDihydrofolate reductase1.5.1.30.457
3mnrSD1Heat shock protein HSP 90-alpha/0.457
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.457
4ye3G04Gag-Pol polyprotein3.4.23.160.457
2bpy3INGag-Pol polyprotein3.4.23.160.456
2c6hPXICytochrome P450 monooxygenase PikC/0.456
2xx513NATP-dependent molecular chaperone HSP82/0.456
1i58ACPChemotaxis protein CheA2.7.13.30.455
1idb0DOGag-Pol polyprotein/0.455
1yt0ADPEndoplasmin/0.455
2bu9HFVIsopenicillin N synthase1.21.3.10.455
4elb34RDihydrofolate reductase/0.455
4hdbG52Gag-Pol polyprotein3.4.23.160.455
3el1DR7Gag-Pol polyprotein3.4.23.160.454
3pqbVGPPutative oxidoreductase/0.454
3rukAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.454
3tmz06XCytochrome P450 2B41.14.14.10.454
2qd8065Gag-Pol polyprotein3.4.23.160.453
2vbdV10Isopenicillin N synthase1.21.3.10.453
3o9aK14Pol polyprotein/0.453
3zpuM8BGag-Pol polyprotein3.4.23.160.453
1ohr1UNV-1 PROTEASE protein/0.452
2bqvA1AProtease/0.452
2zdxP4A[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.452
4awq592Heat shock protein HSP 90-alpha/0.452
4b7sQLECytochrome P450 monooxygenase PikC/0.452
4njsG08Protease/0.452
1bdrIM1Gag-Pol polyprotein3.4.23.160.451
2q54MU1Protease/0.451
3el4ROCGag-Pol polyprotein3.4.23.160.451
3o9cK20Pol polyprotein/0.451
4hla017Gag-Pol polyprotein3.4.23.160.451
4r21STRCytochrome P450 family 17 polypeptide 2/0.451
4z1fH71Heat shock protein 75 kDa, mitochondrial/0.451
2cen4AHProtease/0.450
2psvMUVProtease/0.450
3d2rADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.450
3kf03TLGag-Pol polyprotein/0.450
3o9iA61Gag-Pol polyprotein/0.450
3oxcROCProtease/0.450
4dqb017Gag-Pol polyprotein/0.450
4dqe017Gag-Pol polyprotein/0.450
4enhFVXCholesterol 24-hydroxylase/0.450
5itzLOCTubulin beta-2B chain/0.450
1ec3MS3Gag-Pol polyprotein3.4.23.160.449
1kzjCB3Thymidylate synthase/0.449
1sh9RITGag-Pol polyprotein3.4.23.160.449
2b53D23Cyclin-dependent kinase 22.7.11.220.449
2f3kRO1Protease/0.449
2ic3HBYGag-Pol polyprotein2.7.7.490.449
2idw017Protease/0.449
2q55MU0Protease/0.449
2qfoA51Heat shock protein HSP 90-alpha/0.449
3a2oKNJGag-Pol polyprotein3.4.23.160.449
3i5zZ48Mitogen-activated protein kinase 12.7.11.240.449
3nduROCGag-Pol polyprotein3.4.23.160.449
3nu9478Gag-Pol polyprotein3.4.23.160.449
3oxv478Gag-Pol polyprotein3.4.23.160.449
3qdd94MHeat shock protein HSP 90-alpha/0.449
4efuEFUHeat shock protein HSP 90-alpha/0.449
4r20AERCytochrome P450 family 17 polypeptide 2/0.449
1hosPHPGag-Pol polyprotein/0.448
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.448
1xddAAYIntegrin alpha-L/0.448
2qd6065Gag-Pol polyprotein3.4.23.160.448
2qi0MZ3Gag-Pol polyprotein/0.448
2qi4MZ6Gag-Pol polyprotein/0.448
2qnpQN2Gag-Pol polyprotein3.4.23.160.448
3d1z017Gag-Pol polyprotein3.4.23.160.448
3ekwDR7Gag-Pol polyprotein3.4.23.160.448
3gubGUBDeath-associated protein kinase 12.7.11.10.448
3ozc4CTS-methyl-5'-thioadenosine phosphorylase/0.448
4qi7FADCellobiose dehydrogenase/0.448
1fg62NCGag-Pol polyprotein3.4.23.160.447
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.447
1wbmBLLPol protein/0.447
2b60RITPol polyprotein/0.447
2bu2ATP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial2.7.11.20.447
3cyw017Gag-Pol polyprotein3.4.23.160.447
3jw2017Gag-Pol polyprotein3.4.23.160.447
3kfs3TLGag-Pol polyprotein/0.447
1kceCB3Thymidylate synthase/0.446
1oirHDYCyclin-dependent kinase 22.7.11.220.446
2hcdBIVVitamin D3 receptor A/0.446
3ekt017Gag-Pol polyprotein3.4.23.160.446
3em6017Gag-Pol polyprotein3.4.23.160.446
4awo99BHeat shock protein HSP 90-alpha/0.446
4djpM73Pol polyprotein/0.446
4dqh017Gag-Pol polyprotein/0.446
4ia2BIVVitamin D3 receptor A/0.446
5cccDDFDihydrofolate reductase1.5.1.30.446
1qnfFADDeoxyribodipyrimidine photo-lyase4.1.99.30.445
1xl2189Gag-Pol polyprotein3.4.23.160.445
2nmyROCProtease/0.445
2q5kAB1Protease/0.445
2qi7MZ9Gag-Pol polyprotein/0.445
3dckKVIProtease/0.445
3gobHXXDdmC/0.445
4a6cQG9Gag-Pol polyprotein3.4.23.160.445
4hegG52Gag-Pol polyprotein3.4.23.160.445
4oaeCLMUncharacterized protein/0.445
3livE16Protease/0.444
3ndtROCGag-Pol polyprotein3.4.23.160.444
3pt6SAHDNA (cytosine-5)-methyltransferase 12.1.1.370.444
3ttp017Gag-Pol polyprotein3.4.23.160.444
3uhl2NCGag-Pol polyprotein3.4.23.160.444
4bkz1WSMaternal embryonic leucine zipper kinase2.7.11.10.444
4dqc017Gag-Pol polyprotein/0.444
4h3c0YZDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.444
4ly91YYGlucokinase regulatory protein/0.444
1c6x3INProtease/0.443
1e7qNAPGDP-L-fucose synthase/0.443
1ida0POGag-Pol polyprotein3.4.23.470.443
1t3r017Gag-Pol polyprotein3.4.23.160.443
2b37NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.443
2f8g017Gag-Pol polyprotein3.4.23.160.443
2hw2RFPRifampin ADP-ribosyl transferase/0.443
2pym1UNGag-Pol polyprotein3.4.23.160.443
2r5q1UNGag-Pol polyprotein/0.443
3adaNADSubunit alpha of sarocosine oxidase/0.443
3bvb017Gag-Pol polyprotein3.4.23.160.443
3cyxROCGag-Pol polyprotein3.4.23.160.443
3ggxGGXGag-Pol polyprotein/0.443
3gi6D78Gag-Pol polyprotein/0.443
3nu3478Gag-Pol polyprotein3.4.23.160.443
3nxe2NCProtease/0.443
3zuyTCHTransporter/0.443
4eutBX7Serine/threonine-protein kinase TBK12.7.11.10.443
1muiAB1Protease/0.442
1t7j478Gag-Pol polyprotein3.4.23.160.442
2fdd385Pol protein/0.442
2hm9TRRDihydrofolate reductase1.5.1.30.442
2ieo017Protease/0.442
2p8uCOAHydroxymethylglutaryl-CoA synthase, cytoplasmic2.3.3.100.442
2q641UNGag-Pol polyprotein3.4.23.160.442
3el51UNGag-Pol polyprotein/0.442
3kfr3TLGag-Pol polyprotein/0.442
3mxdK53Gag-Pol polyprotein3.4.23.160.442
3nwxKVSGag-Pol polyprotein3.4.23.160.442
3o9dK19Pol polyprotein/0.442
3sa323XProtease/0.442
4dpmCOAMalonyl-CoA reductase1.2.1.750.442
4g3jVNTLanosterol 14-alpha-demethylase/0.442
1hxwRITGag-Pol polyprotein/0.441
1npa3NHGag-Pol polyprotein3.4.23.160.441
1npwLGZGag-Pol polyprotein3.4.23.160.441
2aidTHKGag-Pol polyprotein3.4.23.160.441
2bpv1INGag-Pol polyprotein3.4.23.160.441
2dteNAIGlucose 1-dehydrogenase related protein/0.441
2givACOHistone acetyltransferase KAT8/0.441
3c0g3AMPeripheral plasma membrane protein CASK2.7.11.10.441
3i7eDJRGag-Pol polyprotein/0.441
3nls016Gag-Pol polyprotein3.4.23.160.441
3oy4017Gag-Pol polyprotein3.4.23.160.441
3s43478Protease/0.441
3sabF78Protease/0.441
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.441
4djy0KRBeta-secretase 13.4.23.460.441
4qgiROCGag-Pol polyprotein3.4.23.160.441
1ebk0Q4Gag-Pol polyprotein3.4.23.160.440
1lf2R37Plasmepsin-23.4.23.390.440
2avvMK1Gag-Pol polyprotein3.4.23.160.440
2jbsFMNp-hydroxyphenylacetate 3-hydroxylase, oxygenase component/0.440
2qi6MZ8Gag-Pol polyprotein/0.440
2upjU02Gag-Pol polyprotein3.4.23.160.440
3cktYDPGag-Pol polyprotein3.4.23.160.440
3d1xROCGag-Pol polyprotein3.4.23.160.440
3d20017Gag-Pol polyprotein3.4.23.160.440
3dk1G05Gag-Pol polyprotein3.4.23.160.440
3ggu017Gag-Pol polyprotein3.4.23.160.440
3icrCOACoenzyme A disulfide reductase/0.440
3qrmNK7Gag-Pol polyprotein3.4.23.160.440
3sa9A68Protease/0.440
3umpATPATP-dependent 6-phosphofructokinase isozyme 22.7.1.110.440
3vqsJT1Genome polyprotein/0.440
4gb20LQGag-Pol polyprotein2.7.7.490.440
4jauADPSensor histidine kinase/0.440