1.770 Å
X-ray
2014-12-17
Name: | Heat shock cognate 90 kDa protein |
---|---|
ID: | HSC90_DICDI |
AC: | P54651 |
Organism: | Dictyostelium discoideum |
Reign: | Eukaryota |
TaxID: | 44689 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 18.796 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.312 | 560.250 |
% Hydrophobic | % Polar |
---|---|
37.35 | 62.65 |
According to VolSite |
HET Code: | ACP |
---|---|
Formula: | C11H14N5O12P3 |
Molecular weight: | 501.176 g/mol |
DrugBank ID: | DB03909 |
Buried Surface Area: | 55.16 % |
Polar Surface area: | 310.64 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
17.2039 | 10.5217 | 75.7312 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2A | ND2 | ASN- 40 | 2.91 | 135.71 | H-Bond (Protein Donor) |
N6 | OD2 | ASP- 82 | 2.86 | 157 | H-Bond (Ligand Donor) |
C1' | SD | MET- 87 | 3.8 | 0 | Hydrophobic |
C4' | CB | ASN- 95 | 3.86 | 0 | Hydrophobic |
C1' | CB | ASN- 95 | 4.14 | 0 | Hydrophobic |
O3G | N | GLY- 127 | 2.99 | 160.02 | H-Bond (Protein Donor) |
O1A | N | PHE- 128 | 2.87 | 160.13 | H-Bond (Protein Donor) |
C5' | CB | PHE- 128 | 4.5 | 0 | Hydrophobic |
O1G | MG | MG- 302 | 1.97 | 0 | Metal Acceptor |
O1B | MG | MG- 302 | 2.02 | 0 | Metal Acceptor |
O2A | MG | MG- 302 | 1.95 | 0 | Metal Acceptor |
N1 | O | HOH- 440 | 2.69 | 149.94 | H-Bond (Protein Donor) |