1.750 Å
X-ray
2014-12-18
| Name: | Heat shock cognate 90 kDa protein |
|---|---|
| ID: | HSC90_DICDI |
| AC: | P54651 |
| Organism: | Dictyostelium discoideum |
| Reign: | Eukaryota |
| TaxID: | 44689 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 20.437 |
|---|---|
| Number of residues: | 36 |
| Including | |
| Standard Amino Acids: | 33 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.300 | 533.250 |
| % Hydrophobic | % Polar |
|---|---|
| 42.41 | 57.59 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 55.67 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 18.829 | -12.1503 | 9.97874 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1A | ND2 | ASN- 40 | 3.04 | 135.54 | H-Bond (Protein Donor) |
| N6 | OD2 | ASP- 82 | 2.81 | 158.95 | H-Bond (Ligand Donor) |
| C1' | SD | MET- 87 | 3.88 | 0 | Hydrophobic |
| C4' | CB | ASN- 95 | 3.99 | 0 | Hydrophobic |
| C1' | CB | ASN- 95 | 4.14 | 0 | Hydrophobic |
| C1' | CD1 | LEU- 96 | 4.24 | 0 | Hydrophobic |
| O2A | N | PHE- 128 | 2.89 | 165.81 | H-Bond (Protein Donor) |
| C5' | CB | PHE- 128 | 4.37 | 0 | Hydrophobic |
| O2B | MG | MG- 302 | 1.94 | 0 | Metal Acceptor |
| O1A | MG | MG- 302 | 1.98 | 0 | Metal Acceptor |
| O1B | O | HOH- 432 | 2.82 | 179.94 | H-Bond (Protein Donor) |
| N1 | O | HOH- 475 | 2.74 | 148.18 | H-Bond (Protein Donor) |