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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

3hz5

1.900 Å

X-ray

2009-06-23

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Heat shock protein HSP 90-alpha
ID:HS90A_HUMAN
AC:P07900
Organism:Homo sapiens
Reign:Eukaryota
TaxID:9606
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:18.690
Number of residues:35
Including
Standard Amino Acids: 33
Non Standard Amino Acids: 0
Water Molecules: 2
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.427732.375

% Hydrophobic% Polar
52.5347.47
According to VolSite

Ligand :
3hz5_1 Structure
HET Code: Z64
Formula: C18H21N7O
Molecular weight: 351.406 g/mol
DrugBank ID: -
Buried Surface Area:62.78 %
Polar Surface area: 99.51 Å2
Number of
H-Bond Acceptors: 5
H-Bond Donors: 2
Rings: 4
Aromatic rings: 4
Anionic atoms: 0
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 7

Mass center Coordinates

XYZ
3.2994211.53124.7802


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C12CBASN- 514.060Hydrophobic
N9OD2ASP- 932.74151.86H-Bond
(Ligand Donor)
C11SDMET- 983.990Hydrophobic
C14SDMET- 983.80Hydrophobic
C21CD2LEU- 1033.590Hydrophobic
C11CD2LEU- 1073.740Hydrophobic
C14CD1LEU- 1074.110Hydrophobic
C21CD1LEU- 1074.360Hydrophobic
C13CD1PHE- 1384.070Hydrophobic
C15CGPHE- 1383.480Hydrophobic
N18OHTYR- 1393.39121.62H-Bond
(Protein Donor)
C21CE2TRP- 1623.60Hydrophobic
N4OHOH- 2792.7167.55H-Bond
(Ligand Donor)
N19OHOH- 2992.8163.56H-Bond
(Ligand Donor)