2.200 Å
X-ray
2006-03-02
Name: | ATP-dependent molecular chaperone HSP82 |
---|---|
ID: | HSP82_YEAST |
AC: | P02829 |
Organism: | Saccharomyces cerevisiae |
Reign: | Eukaryota |
TaxID: | 559292 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 9.680 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.922 | 405.000 |
% Hydrophobic | % Polar |
---|---|
51.67 | 48.33 |
According to VolSite |
HET Code: | P2N |
---|---|
Formula: | C17H18ClO5 |
Molecular weight: | 337.775 g/mol |
DrugBank ID: | DB08346 |
Buried Surface Area: | 63.85 % |
Polar Surface area: | 86.66 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 1 |
Rings: | 2 |
Aromatic rings: | 1 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 0 |
X | Y | Z |
---|---|---|
-19.903 | 33.3774 | -5.27248 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C10 | CB | ASN- 37 | 4.18 | 0 | Hydrophobic |
C5 | CB | ASN- 37 | 3.56 | 0 | Hydrophobic |
C13 | CB | ASP- 40 | 3.56 | 0 | Hydrophobic |
C16 | CB | ALA- 41 | 4.14 | 0 | Hydrophobic |
C3 | CB | ALA- 41 | 3.92 | 0 | Hydrophobic |
C16 | CG | LYS- 44 | 4.09 | 0 | Hydrophobic |
O3 | OD2 | ASP- 79 | 3.28 | 124.98 | H-Bond (Ligand Donor) |
C16 | CG2 | ILE- 82 | 3.4 | 0 | Hydrophobic |
C8 | SD | MET- 84 | 3.6 | 0 | Hydrophobic |
C17 | CG | MET- 84 | 3.99 | 0 | Hydrophobic |
C7 | CE | MET- 84 | 3.83 | 0 | Hydrophobic |
C8 | CD2 | LEU- 93 | 4.09 | 0 | Hydrophobic |
CL1 | CD2 | LEU- 93 | 3.95 | 0 | Hydrophobic |
CL1 | CD1 | PHE- 124 | 3.33 | 0 | Hydrophobic |
C2 | CG2 | THR- 171 | 4.45 | 0 | Hydrophobic |
C3 | CB | THR- 171 | 3.96 | 0 | Hydrophobic |
C4 | CG2 | THR- 171 | 4.13 | 0 | Hydrophobic |
C5 | CD1 | LEU- 173 | 3.73 | 0 | Hydrophobic |