scPDB - 2psv entry

Protein Data Bank Entry:

PDB ID : 2psv

Resolution :1.750 Å

Experimental Method : X-ray

Deposition Date : 2007-05-07

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Protease
ID:	O38707_9HIV1
AC:	O38707
Organism:	Human immunodeficiency virus 1
Reign:	Viruses
TaxID:	11676
EC Number:	/

Chains:

Chain Name:	Percentage of Residues within binding site
A	49 %
B	51 %

Ligand binding site composition:

B-Factor:	17.132
Number of residues:	41
Including
Standard Amino Acids:	41
Non Standard Amino Acids:	0
Water Molecules:	0
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.668	644.625

% Hydrophobic	% Polar
42.93	57.07
According to VolSite

Ligand :

HET Code:	MUV
Formula:	C23H31N3O6S
Molecular weight:	477.574 g/mol
DrugBank ID:	DB08223
Buried Surface Area:	71.92 %
Polar Surface area:	137.32 Å2

Number of
H-Bond Acceptors:	5
H-Bond Donors:	3
Rings:	3
Aromatic rings:	2
Anionic atoms:	0
Cationic atoms:	0
Rule of Five Violation:	0
Rotatable Bonds:	13

Mass center Coordinates

X	Y	Z
19.6005	29.6639	13.8269

Binding mode :

What is Poseview ?

2D View
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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C33	CD1	LEU- 23	4	0	Hydrophobic	false
C15	CD2	LEU- 23	4.48	0	Hydrophobic	false
O18	OD1	ASP- 25	2.59	172.58	H-Bond (Ligand Donor)	false
O18	OD2	ASP- 25	2.91	120.38	H-Bond (Ligand Donor)	false
O18	OD1	ASP- 25	2.59	162.9	H-Bond (Protein Donor)	false
N20	O	GLY- 27	3.15	154.48	H-Bond (Ligand Donor)	false
C23	CB	ALA- 28	3.98	0	Hydrophobic	false
C16	CB	ALA- 28	4.17	0	Hydrophobic	false
O26	N	ASP- 29	2.82	139.36	H-Bond (Protein Donor)	false
N27	O	GLY- 48	3.02	154.24	H-Bond (Ligand Donor)	false
C23	CD1	ILE- 50	3.82	0	Hydrophobic	false
C37	CB	ILE- 50	4.28	0	Hydrophobic	false
C36	CG	PRO- 81	3.61	0	Hydrophobic	false
C15	CG	PRO- 81	3.96	0	Hydrophobic	false
C15	CG1	VAL- 82	3.79	0	Hydrophobic	false
C35	CG2	VAL- 82	3.6	0	Hydrophobic	false
C37	CD1	ILE- 84	3.96	0	Hydrophobic	false
C15	CG2	ILE- 84	4.07	0	Hydrophobic	false