2.050 Å
X-ray
2009-03-18
Name: | DdmC |
---|---|
ID: | Q5S3I3_STEMA |
AC: | Q5S3I3 |
Organism: | Stenotrophomonas maltophilia |
Reign: | Bacteria |
TaxID: | 40324 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 44.024 |
---|---|
Number of residues: | 19 |
Including | |
Standard Amino Acids: | 19 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.485 | 1171.125 |
% Hydrophobic | % Polar |
---|---|
48.70 | 51.30 |
According to VolSite |
HET Code: | HXX |
---|---|
Formula: | C7H3Cl2O3 |
Molecular weight: | 206.003 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 36.77 % |
Polar Surface area: | 60.36 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 1 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
22.1183 | -9.22725 | 34.1719 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1' | ND2 | ASN- 230 | 3.25 | 162.3 | H-Bond (Protein Donor) |
CL1 | CD1 | ILE- 232 | 3.96 | 0 | Hydrophobic |
C4 | CG2 | ILE- 232 | 3.8 | 0 | Hydrophobic |
C2 | CG1 | ILE- 232 | 3.81 | 0 | Hydrophobic |
O1' | NE2 | HIS- 251 | 3.18 | 163.65 | H-Bond (Protein Donor) |
CL2 | CB | SER- 267 | 4.44 | 0 | Hydrophobic |
CL2 | CD2 | LEU- 282 | 4.37 | 0 | Hydrophobic |
O1' | NE2 | GLN- 286 | 3.26 | 123.33 | H-Bond (Protein Donor) |
O2' | NE2 | GLN- 286 | 3.16 | 172.95 | H-Bond (Protein Donor) |
CL2 | CG | GLN- 286 | 4.42 | 0 | Hydrophobic |