2.050 Å
X-ray
2009-03-18
| Name: | DdmC |
|---|---|
| ID: | Q5S3I3_STEMA |
| AC: | Q5S3I3 |
| Organism: | Stenotrophomonas maltophilia |
| Reign: | Bacteria |
| TaxID: | 40324 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 44.024 |
|---|---|
| Number of residues: | 19 |
| Including | |
| Standard Amino Acids: | 19 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.485 | 1171.125 |
| % Hydrophobic | % Polar |
|---|---|
| 48.70 | 51.30 |
| According to VolSite | |

| HET Code: | HXX |
|---|---|
| Formula: | C7H3Cl2O3 |
| Molecular weight: | 206.003 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 36.77 % |
| Polar Surface area: | 60.36 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 1 |
| Rings: | 1 |
| Aromatic rings: | 1 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| 22.1183 | -9.22725 | 34.1719 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1' | ND2 | ASN- 230 | 3.25 | 162.3 | H-Bond (Protein Donor) |
| CL1 | CD1 | ILE- 232 | 3.96 | 0 | Hydrophobic |
| C4 | CG2 | ILE- 232 | 3.8 | 0 | Hydrophobic |
| C2 | CG1 | ILE- 232 | 3.81 | 0 | Hydrophobic |
| O1' | NE2 | HIS- 251 | 3.18 | 163.65 | H-Bond (Protein Donor) |
| CL2 | CB | SER- 267 | 4.44 | 0 | Hydrophobic |
| CL2 | CD2 | LEU- 282 | 4.37 | 0 | Hydrophobic |
| O1' | NE2 | GLN- 286 | 3.26 | 123.33 | H-Bond (Protein Donor) |
| O2' | NE2 | GLN- 286 | 3.16 | 172.95 | H-Bond (Protein Donor) |
| CL2 | CG | GLN- 286 | 4.42 | 0 | Hydrophobic |