1.210 Å
X-ray
2014-12-18
| Name: | Heat shock cognate 90 kDa protein |
|---|---|
| ID: | HSC90_DICDI |
| AC: | P54651 |
| Organism: | Dictyostelium discoideum |
| Reign: | Eukaryota |
| TaxID: | 44689 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 12.837 |
|---|---|
| Number of residues: | 38 |
| Including | |
| Standard Amino Acids: | 33 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 4 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.247 | 540.000 |
| % Hydrophobic | % Polar |
|---|---|
| 37.50 | 62.50 |
| According to VolSite | |

| HET Code: | AGS |
|---|---|
| Formula: | C10H14N5O12P3S |
| Molecular weight: | 521.231 g/mol |
| DrugBank ID: | DB02930 |
| Buried Surface Area: | 52.7 % |
| Polar Surface area: | 329.24 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 5 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 5.74841 | 10.9359 | 46.9592 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2A | ND2 | ASN- 40 | 2.95 | 142.5 | H-Bond (Protein Donor) |
| N6 | OD2 | ASP- 82 | 2.86 | 157.21 | H-Bond (Ligand Donor) |
| C1' | SD | MET- 87 | 3.88 | 0 | Hydrophobic |
| C4' | CB | ASN- 95 | 4 | 0 | Hydrophobic |
| C1' | CB | ASN- 95 | 4.12 | 0 | Hydrophobic |
| C1' | CD2 | LEU- 96 | 4.29 | 0 | Hydrophobic |
| O1A | N | PHE- 128 | 2.83 | 165.12 | H-Bond (Protein Donor) |
| C5' | CB | PHE- 128 | 4.46 | 0 | Hydrophobic |
| O1B | MG | MG- 302 | 2.02 | 0 | Metal Acceptor |
| O2A | MG | MG- 302 | 2.06 | 0 | Metal Acceptor |
| N1 | O | HOH- 501 | 2.74 | 147.51 | H-Bond (Protein Donor) |
| O2B | O | HOH- 516 | 2.84 | 179.96 | H-Bond (Protein Donor) |