Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Protein Data Bank Entry:

4enh

2.500 Å

X-ray

2012-04-13

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Cholesterol 24-hydroxylase
ID:CP46A_HUMAN
AC:Q9Y6A2
Organism:Homo sapiens
Reign:Eukaryota
TaxID:9606
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:38.754
Number of residues:36
Including
Standard Amino Acids: 34
Non Standard Amino Acids: 1
Water Molecules: 1
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.2831464.750

% Hydrophobic% Polar
55.0744.93
According to VolSite

Ligand :
4enh_1 Structure
HET Code: FVX
Formula: C15H22F3N2O2
Molecular weight: 319.343 g/mol
DrugBank ID: DB00176
Buried Surface Area:72.16 %
Polar Surface area: 58.46 Å2
Number of
H-Bond Acceptors: 3
H-Bond Donors: 1
Rings: 1
Aromatic rings: 1
Anionic atoms: 0
Cationic atoms: 1
Rule of Five Violation: 0
Rotatable Bonds: 10

Mass center Coordinates

XYZ
0.20654531.4143-20.9235


Binding mode :
What is Poseview ?
  • 2D View
  • 3D View
Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
F22CZPHE- 803.230Hydrophobic
F20CE2PHE- 804.280Hydrophobic
F20CZTYR- 1094.480Hydrophobic
C5CD2LEU- 1124.070Hydrophobic
C1CZPHE- 1213.690Hydrophobic
C4CE1PHE- 1213.880Hydrophobic
C1CD2LEU- 2193.70Hydrophobic
C1CD1ILE- 2223.490Hydrophobic
C1CG2ILE- 3013.710Hydrophobic
C3CG2ILE- 3013.70Hydrophobic
C11CBALA- 3023.340Hydrophobic
N12OALA- 3022.82136.64H-Bond
(Ligand Donor)
N12OG1THR- 3063.02159.2H-Bond
(Ligand Donor)
C10CG2THR- 3063.550Hydrophobic
C18CBALA- 3674.080Hydrophobic
F20CH2TRP- 3684.50Hydrophobic
F22CZ2TRP- 3683.210Hydrophobic
F20CE2PHE- 3713.760Hydrophobic
C1CBALA- 4743.740Hydrophobic
C6CG2THR- 4753.80Hydrophobic