2.700 Å
X-ray
2013-02-19
Name: | Sensor histidine kinase |
---|---|
ID: | Q9WZV7_THEMA |
AC: | Q9WZV7 |
Organism: | Thermotoga maritima |
Reign: | Bacteria |
TaxID: | 243274 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 72.137 |
---|---|
Number of residues: | 31 |
Including | |
Standard Amino Acids: | 31 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.934 | 533.250 |
% Hydrophobic | % Polar |
---|---|
50.63 | 49.37 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 64.9 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-9.80604 | 22.3377 | 0.999704 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1A | ND2 | ASN- 376 | 3.45 | 161.35 | H-Bond (Protein Donor) |
O1A | ND2 | ASN- 380 | 3.03 | 123.92 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 383 | 3.4 | 144.31 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 383 | 3.4 | 0 | Ionic (Protein Cationic) |
O3B | NZ | LYS- 383 | 3.52 | 0 | Ionic (Protein Cationic) |
O1B | OH | TYR- 384 | 2.52 | 178.4 | H-Bond (Protein Donor) |
C2' | CZ | TYR- 384 | 3.63 | 0 | Hydrophobic |
N6 | OD1 | ASP- 411 | 3.19 | 148.34 | H-Bond (Ligand Donor) |
C4' | CG2 | ILE- 424 | 4.01 | 0 | Hydrophobic |
C1' | CG2 | ILE- 424 | 3.75 | 0 | Hydrophobic |
O2A | N | LEU- 446 | 2.78 | 164.53 | H-Bond (Protein Donor) |
C5' | CD1 | LEU- 446 | 4.42 | 0 | Hydrophobic |