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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jau ADP Sensor histidine kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4jau ADPSensor histidine kinase / 0.904
2c2a ADPSensor histidine kinase / 0.753
4pl9 ADPEthylene receptor 1 / 0.745
3sl2 ATPSensor histidine kinase WalK / 0.724
4bix ADPSensor histidine kinase CpxA / 0.722
4biw ANPSensor histidine kinase CpxA / 0.712
1i5a ACPChemotaxis protein CheA 2.7.13.3 0.683
1i59 ANPChemotaxis protein CheA 2.7.13.3 0.676
3dge ADPSensor histidine kinase / 0.668
1i5b ANPChemotaxis protein CheA 2.7.13.3 0.667
3a0t ADPSensor histidine kinase / 0.664
5c93 ACPTwo-component system histidine protein kinase / 0.656
1th8 ADPAnti-sigma F factor / 0.655
4wuc ANPDNA gyrase subunit B / 0.651