2.540 Å
X-ray
2007-11-30
Name: | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial |
---|---|
ID: | PDK4_HUMAN |
AC: | Q16654 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.2 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 44.785 |
---|---|
Number of residues: | 31 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.834 | 425.250 |
% Hydrophobic | % Polar |
---|---|
50.00 | 50.00 |
According to VolSite |
HET Code: | P4A |
---|---|
Formula: | C17H16N2O3 |
Molecular weight: | 296.321 g/mol |
DrugBank ID: | DB08356 |
Buried Surface Area: | 50.34 % |
Polar Surface area: | 78.37 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
-26.1061 | 11.1005 | 13.392 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C23 | CB | ASN- 258 | 3.48 | 0 | Hydrophobic |
C21 | CB | ALA- 262 | 4.06 | 0 | Hydrophobic |
C8 | CG1 | VAL- 298 | 4.49 | 0 | Hydrophobic |
C25 | CD1 | LEU- 306 | 4.37 | 0 | Hydrophobic |
C34 | CD2 | LEU- 306 | 4.48 | 0 | Hydrophobic |
C15 | CD2 | LEU- 306 | 3.37 | 0 | Hydrophobic |
C34 | CD1 | PHE- 330 | 3.71 | 0 | Hydrophobic |
C24 | CD2 | LEU- 350 | 3.9 | 0 | Hydrophobic |
C21 | CB | THR- 358 | 3.84 | 0 | Hydrophobic |
C22 | CG2 | THR- 358 | 3.76 | 0 | Hydrophobic |
N2 | O | HOH- 511 | 2.86 | 159.7 | H-Bond (Ligand Donor) |