2.000 Å
X-ray
1997-06-20
Name: | ATP-dependent molecular chaperone HSP82 |
---|---|
ID: | HSP82_YEAST |
AC: | P02829 |
Organism: | Saccharomyces cerevisiae |
Reign: | Eukaryota |
TaxID: | 559292 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 16.401 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.046 | 540.000 |
% Hydrophobic | % Polar |
---|---|
45.63 | 54.38 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 55.12 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
14.4728 | -3.0783 | -3.839 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2A | ND2 | ASN- 37 | 2.8 | 147.47 | H-Bond (Protein Donor) |
N6 | OD2 | ASP- 79 | 2.93 | 162.54 | H-Bond (Ligand Donor) |
C1' | SD | MET- 84 | 3.88 | 0 | Hydrophobic |
C4' | CB | ASN- 92 | 4.06 | 0 | Hydrophobic |
C1' | CB | ASN- 92 | 4.12 | 0 | Hydrophobic |
C1' | CD2 | LEU- 93 | 4.42 | 0 | Hydrophobic |
C5' | CD2 | LEU- 93 | 4.11 | 0 | Hydrophobic |
O1B | NZ | LYS- 98 | 3.2 | 148.4 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 98 | 3.2 | 0 | Ionic (Protein Cationic) |
O2A | N | PHE- 124 | 3 | 131.11 | H-Bond (Protein Donor) |
C5' | CB | PHE- 124 | 4.38 | 0 | Hydrophobic |
N1 | O | HOH- 403 | 2.76 | 165.67 | H-Bond (Protein Donor) |