sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1am1 | ADP | ATP-dependent molecular chaperone HSP82 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1am1 | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.879 | |
| 1amw | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.837 | |
| 4xcl | AGS | Heat shock cognate 90 kDa protein | / | 0.736 | |
| 2wep | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.724 | |
| 4xcj | ADP | Heat shock cognate 90 kDa protein | / | 0.721 | |
| 4gqt | ADP | Heat shock protein 90 | / | 0.719 | |
| 1yt0 | ADP | Endoplasmin | / | 0.716 | |
| 3t10 | ACP | Heat shock protein HSP 90-alpha | / | 0.712 | |
| 4xc0 | ACP | Heat shock cognate 90 kDa protein | / | 0.702 | |
| 2ior | ADP | Chaperone protein HtpG | / | 0.690 | |
| 2xk2 | ADP | Heat shock protein HSP 90-alpha | / | 0.690 | |
| 2gqp | PA7 | Endoplasmin | / | 0.686 | |
| 3t1k | ANP | Heat shock protein HSP 90-alpha | / | 0.683 | |
| 1qy5 | NEC | Endoplasmin | / | 0.682 | |
| 1u0y | PA7 | Endoplasmin | / | 0.681 | |
| 4prv | ADP | DNA gyrase subunit B | / | 0.669 | |
| 1jm6 | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial | 2.7.11.2 | 0.667 | |
| 2xcm | ADP | Cytosolic heat shock protein 90 | / | 0.666 | |
| 3t0z | ATP | Heat shock protein HSP 90-alpha | / | 0.664 | |
| 5f5r | ANP | Heat shock protein 75 kDa, mitochondrial | / | 0.663 | |
| 1u2o | NEC | Endoplasmin | / | 0.661 | |
| 4prx | ADP | DNA gyrase subunit B | / | 0.658 | |
| 4ivg | ANP | TNF receptor-associated protein 1 | / | 0.656 | |
| 2yeg | XQG | Heat shock protein HSP 90-alpha | / | 0.653 | |
| 2hch | N5A | Endoplasmin | / | 0.652 | |
| 2zkj | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.651 | |
| 1y4s | ADP | Chaperone protein HtpG | / | 0.650 |