sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1am1 | ADP | ATP-dependent molecular chaperone HSP82 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 1am1 | ADP | ATP-dependent molecular chaperone HSP82 | / | 1.000 | |
| 1amw | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.716 | |
| 4as9 | 4QS | ATP-dependent molecular chaperone HSP82 | / | 0.605 | |
| 2wep | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.603 | |
| 4ce1 | 7FK | ATP-dependent molecular chaperone HSP82 | / | 0.600 | |
| 2vw5 | BC6 | ATP-dependent molecular chaperone HSP82 | / | 0.581 | |
| 3r4p | FU7 | Heat shock protein HSP 90-alpha | / | 0.578 | |
| 2bt0 | CT5 | Heat shock protein HSP 90-alpha | / | 0.564 | |
| 3r4o | FU3 | Heat shock protein HSP 90-alpha | / | 0.557 | |
| 2brc | CT5 | ATP-dependent molecular chaperone HSP82 | / | 0.556 | |
| 4ce2 | BO5 | ATP-dependent molecular chaperone HSP82 | / | 0.555 | |
| 3rlr | 3RR | Heat shock protein HSP 90-alpha | / | 0.552 | |
| 3vha | VHA | Heat shock protein HSP 90-alpha | / | 0.552 | |
| 2xx2 | 13C | ATP-dependent molecular chaperone HSP82 | / | 0.551 | |
| 1u0z | RDC | Endoplasmin | / | 0.550 | |
| 2wer | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.550 | |
| 2iwu | NP5 | ATP-dependent molecular chaperone HSP82 | / | 0.548 | |
| 4bqj | XKL | Heat shock protein HSP 90-alpha | / | 0.545 | |
| 2xk2 | ADP | Heat shock protein HSP 90-alpha | / | 0.539 | |
| 1bgq | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.538 | |
| 2qg0 | A94 | Heat shock protein HSP 90-alpha | / | 0.537 | |
| 1uye | PU9 | Heat shock protein HSP 90-alpha | / | 0.536 | |
| 2xd6 | XD6 | ATP-dependent molecular chaperone HSP82 | / | 0.535 | |
| 3t10 | ACP | Heat shock protein HSP 90-alpha | / | 0.535 | |
| 4egi | B2J | Heat shock protein HSP 90-alpha | / | 0.535 | |
| 5f5r | ANP | Heat shock protein 75 kDa, mitochondrial | / | 0.535 | |
| 2bre | KJ2 | ATP-dependent molecular chaperone HSP82 | / | 0.533 | |
| 3hhu | 819 | Heat shock protein HSP 90-alpha | / | 0.533 | |
| 3ied | AN2 | HSP90 | / | 0.530 | |
| 2byh | 2D7 | Heat shock protein HSP 90-alpha | / | 0.528 | |
| 4fcr | 0TM | Heat shock protein HSP 90-alpha | / | 0.526 | |
| 2cgf | P2N | ATP-dependent molecular chaperone HSP82 | / | 0.525 | |
| 4jql | VJ6 | Heat shock protein HSP 90-alpha | / | 0.524 | |
| 4gqt | ADP | Heat shock protein 90 | / | 0.522 | |
| 1y4s | ADP | Chaperone protein HtpG | / | 0.520 | |
| 1ysz | NEC | Endoplasmin | / | 0.518 | |
| 3r4n | FU5 | Heat shock protein HSP 90-alpha | / | 0.518 | |
| 3ekr | PY9 | Heat shock protein HSP 90-alpha | / | 0.517 | |
| 4ce3 | L4V | ATP-dependent molecular chaperone HSP82 | / | 0.515 | |
| 1qy8 | RDI | Endoplasmin | / | 0.510 | |
| 1yc3 | 4BC | Heat shock protein HSP 90-alpha | / | 0.510 | |
| 3rlq | 3RQ | Heat shock protein HSP 90-alpha | / | 0.510 | |
| 2bz5 | AB4 | Heat shock protein HSP 90-alpha | / | 0.507 | |
| 2fxs | RDA | ATP-dependent molecular chaperone HSP82 | / | 0.506 | |
| 3b28 | B2X | Heat shock protein HSP 90-alpha | / | 0.504 | |
| 4asg | 814 | ATP-dependent molecular chaperone HSP82 | / | 0.504 | |
| 1yc4 | 43P | Heat shock protein HSP 90-alpha | / | 0.502 | |
| 2byi | 2DD | Heat shock protein HSP 90-alpha | / | 0.500 | |
| 2xx4 | 13I | ATP-dependent molecular chaperone HSP82 | / | 0.500 | |
| 3k97 | 4CD | Heat shock protein HSP 90-alpha | / | 0.498 | |
| 3omu | IBD | Heat shock protein 83 | / | 0.497 | |
| 1u2o | NEC | Endoplasmin | / | 0.495 | |
| 1uy7 | PU4 | Heat shock protein HSP 90-alpha | / | 0.493 | |
| 1uym | PU3 | Heat shock protein HSP 90-beta | / | 0.493 | |
| 3hyz | 42C | Heat shock protein HSP 90-alpha | / | 0.493 | |
| 1yc1 | 4BC | Heat shock protein HSP 90-alpha | / | 0.492 | |
| 2exl | GDM | Endoplasmin | / | 0.492 | |
| 2yeg | XQG | Heat shock protein HSP 90-alpha | / | 0.490 | |
| 3t2s | AGS | Heat shock protein HSP 90-alpha | / | 0.490 | |
| 2iwx | M1S | ATP-dependent molecular chaperone HSP82 | / | 0.489 | |
| 3hz5 | Z64 | Heat shock protein HSP 90-alpha | / | 0.489 | |
| 4xcj | ADP | Heat shock cognate 90 kDa protein | / | 0.489 | |
| 4nh8 | 2LC | Heat shock protein HSP 90-alpha | / | 0.488 | |
| 2yee | 2EC | Heat shock protein HSP 90-alpha | / | 0.487 | |
| 2gqp | PA7 | Endoplasmin | / | 0.486 | |
| 2vwc | BC2 | ATP-dependent molecular chaperone HSP82 | / | 0.486 | |
| 3c11 | GDM | ATP-dependent molecular chaperone HSP82 | / | 0.486 | |
| 4asf | 62U | ATP-dependent molecular chaperone HSP82 | / | 0.485 | |
| 1u0y | PA7 | Endoplasmin | / | 0.484 | |
| 2xhr | C0P | Heat shock protein HSP 90-alpha | / | 0.484 | |
| 4efu | EFU | Heat shock protein HSP 90-alpha | / | 0.484 | |
| 3d0b | SNX | Heat shock protein HSP 90-alpha | / | 0.482 | |
| 1uyi | PUZ | Heat shock protein HSP 90-alpha | / | 0.480 | |
| 3t1k | ANP | Heat shock protein HSP 90-alpha | / | 0.479 | |
| 2xab | VHD | Heat shock protein HSP 90-alpha | / | 0.478 | |
| 1byq | ADP | Heat shock protein HSP 90-alpha | / | 0.476 | |
| 2yef | ANP | Heat shock protein HSP 90-alpha | / | 0.476 | |
| 3o0i | P54 | Heat shock protein HSP 90-alpha | / | 0.474 | |
| 1uy6 | PU3 | Heat shock protein HSP 90-alpha | / | 0.473 | |
| 1uyd | PU8 | Heat shock protein HSP 90-alpha | / | 0.473 | |
| 2qfo | A13 | Heat shock protein HSP 90-alpha | / | 0.473 | |
| 2hch | N5A | Endoplasmin | / | 0.472 | |
| 4ipe | ANP | TNF receptor-associated protein 1 | / | 0.472 | |
| 1uyf | PU1 | Heat shock protein HSP 90-alpha | / | 0.471 | |
| 3o6o | 94M | Heat shock protein 83 | / | 0.471 | |
| 1qy5 | NEC | Endoplasmin | / | 0.469 | |
| 2gfd | RDA | Endoplasmin | / | 0.469 | |
| 2qfo | A51 | Heat shock protein HSP 90-alpha | / | 0.469 | |
| 3wha | WHA | Heat shock protein HSP 90-alpha | / | 0.469 | |
| 4xcl | AGS | Heat shock cognate 90 kDa protein | / | 0.469 | |
| 3inx | JZC | Heat shock protein HSP 90-alpha | / | 0.467 | |
| 4xc0 | ACP | Heat shock cognate 90 kDa protein | / | 0.467 | |
| 2wi6 | ZZ6 | Heat shock protein HSP 90-alpha | / | 0.466 | |
| 3hek | BD0 | Heat shock protein HSP 90-alpha | / | 0.462 | |
| 3k98 | 1RC | Heat shock protein HSP 90-alpha | / | 0.462 | |
| 1uy9 | PU6 | Heat shock protein HSP 90-alpha | / | 0.461 | |
| 2hg1 | N5O | Endoplasmin | / | 0.459 | |
| 2yke | YKE | Heat shock protein HSP 90-alpha | / | 0.459 | |
| 3ft8 | MOJ | Heat shock protein HSP 90-alpha | / | 0.458 | |
| 2iws | NP4 | ATP-dependent molecular chaperone HSP82 | / | 0.457 | |
| 2ykb | YKB | Heat shock protein HSP 90-alpha | / | 0.457 | |
| 1uy8 | PU5 | Heat shock protein HSP 90-alpha | / | 0.456 | |
| 4awq | 592 | Heat shock protein HSP 90-alpha | / | 0.456 | |
| 3t0z | ATP | Heat shock protein HSP 90-alpha | / | 0.452 | |
| 4r21 | STR | Cytochrome P450 family 17 polypeptide 2 | / | 0.451 | |
| 2h55 | DZ8 | Heat shock protein HSP 90-alpha | / | 0.449 | |
| 2zdx | P4A | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.449 | |
| 3inw | JZB | Heat shock protein HSP 90-alpha | / | 0.449 | |
| 1uyc | PU7 | Heat shock protein HSP 90-alpha | / | 0.448 | |
| 1uyk | PUX | Heat shock protein HSP 90-alpha | / | 0.448 | |
| 2ykj | YKJ | Heat shock protein HSP 90-alpha | / | 0.448 | |
| 2yki | YKI | Heat shock protein HSP 90-alpha | / | 0.447 | |
| 2xcm | ADP | Cytosolic heat shock protein 90 | / | 0.445 | |
| 3hz1 | 42C | Heat shock protein HSP 90-alpha | / | 0.445 | |
| 5itz | LOC | Tubulin beta-2B chain | / | 0.443 | |
| 2o1u | ANP | Endoplasmin | / | 0.442 | |
| 2yi5 | YI5 | Heat shock protein HSP 90-alpha | / | 0.442 | |
| 3k99 | PFT | Heat shock protein HSP 90-alpha | / | 0.442 | |
| 1nhh | ANP | DNA mismatch repair protein MutL | / | 0.441 | |
| 2yei | XQI | Heat shock protein HSP 90-alpha | / | 0.441 | |
| 1xe6 | 5FP | Plasmepsin-2 | 3.4.23.39 | 0.440 | |
| 2bu8 | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial | 2.7.11.2 | 0.440 | |
| 2fyp | RDE | Endoplasmin | / | 0.440 |