2.000 Å
X-ray
2009-04-01
| Name: | ATP-dependent molecular chaperone HSP82 |
|---|---|
| ID: | HSP82_YEAST |
| AC: | P02829 |
| Organism: | Saccharomyces cerevisiae |
| Reign: | Eukaryota |
| TaxID: | 559292 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 32.320 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 30 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.278 | 543.375 |
| % Hydrophobic | % Polar |
|---|---|
| 50.31 | 49.69 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 49.03 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -22.6116 | 34.1354 | -4.22356 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2A | ND2 | ASN- 37 | 2.95 | 122.89 | H-Bond (Protein Donor) |
| N6 | OD1 | ASP- 79 | 2.71 | 148.13 | H-Bond (Ligand Donor) |
| C1' | SD | MET- 84 | 3.93 | 0 | Hydrophobic |
| C4' | CB | ASN- 92 | 4.45 | 0 | Hydrophobic |
| C1' | CB | ASN- 92 | 4.48 | 0 | Hydrophobic |
| O1A | N | PHE- 124 | 3.24 | 160.82 | H-Bond (Protein Donor) |
| N1 | O | HOH- 2110 | 2.58 | 172.71 | H-Bond (Protein Donor) |