2.000 Å
X-ray
2009-04-01
Name: | ATP-dependent molecular chaperone HSP82 |
---|---|
ID: | HSP82_YEAST |
AC: | P02829 |
Organism: | Saccharomyces cerevisiae |
Reign: | Eukaryota |
TaxID: | 559292 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 32.320 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.278 | 543.375 |
% Hydrophobic | % Polar |
---|---|
50.31 | 49.69 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 49.03 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-22.6116 | 34.1354 | -4.22356 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2A | ND2 | ASN- 37 | 2.95 | 122.89 | H-Bond (Protein Donor) |
N6 | OD1 | ASP- 79 | 2.71 | 148.13 | H-Bond (Ligand Donor) |
C1' | SD | MET- 84 | 3.93 | 0 | Hydrophobic |
C4' | CB | ASN- 92 | 4.45 | 0 | Hydrophobic |
C1' | CB | ASN- 92 | 4.48 | 0 | Hydrophobic |
O1A | N | PHE- 124 | 3.24 | 160.82 | H-Bond (Protein Donor) |
N1 | O | HOH- 2110 | 2.58 | 172.71 | H-Bond (Protein Donor) |