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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1uayADNOxidoreductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1uayADNOxidoreductase/1.000
2wdzNADGalactitol dehydrogenase/0.568
2dknNAI3-alpha-hydroxysteroid dehydrogenase/0.555
3r3sNADPutative oxidoreductase/0.554
1bdbNADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase/0.553
1e6wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.550
3toxNAPPutative oxidoreductase/0.543
1nffNAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.538
3gegNADShort-chain dehydrogenase/reductase SDR/0.534
3p19NDPPutative blue fluorescent protein/0.531
4fn4NADShort chain dehydrogenase/0.530
1geeNADGlucose 1-dehydrogenase1.1.1.470.529
3a28NADL-2,3-butanediol dehydrogenase1.1.1.760.527
5jydNADShort chain dehydrogenase/0.523
1gcoNADGlucose 1-dehydrogenase1.1.1.470.520
4gh5NADShort-chain dehydrogenase/reductase SDR/0.520
5jlaNADPutative short-chain dehydrogenase/reductase/0.520
2wsbNADGalactitol dehydrogenase/0.519
1e3wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.518
3d3wNAPL-xylulose reductase1.1.1.100.518
4j7uNAPSepiapterin reductase1.1.1.1530.514
3iahNAPPutative oxoacyl-(Acyl carrier protein) reductase/0.513
4yagNAIC alpha-dehydrogenase/0.512
1pr9NAPL-xylulose reductase1.1.1.100.510
5jsfNAD17-beta-hydroxysteroid dehydrogenase 141.1.10.507
1gegNADDiacetyl reductase [(S)-acetoin forming]1.1.1.3040.505
3s55NADPutative short-chain dehydrogenase/reductase/0.503
1w4zNAPPutative ketoacyl reductase1.3.10.502
2ohxNADAlcohol dehydrogenase E chain1.1.1.10.501
3ijrNADOxidoreductase, short chain dehydrogenase/reductase family/0.501
5idwNAPShort-chain dehydrogenase/reductase SDR/0.501
1x7gNAPPutative ketoacyl reductase1.3.10.500
3ak4NADNADH-dependent quinuclidinone reductase/0.500
3w8eNAD3-hydroxybutyrate dehydrogenase/0.497
4j7xNAPSepiapterin reductase1.1.1.1530.497
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.496
2gdzNAD15-hydroxyprostaglandin dehydrogenase [NAD(+)]1.1.1.1410.495
4cqlNADEstradiol 17-beta-dehydrogenase 81.1.1.620.495
4fj1NAP17beta-hydroxysteroid dehydrogenase/0.495
1cydNDPCarbonyl reductase [NADPH] 21.1.1.1840.494
3qwfNAP17beta-hydroxysteroid dehydrogenase/0.494
3wmxNADNAD dependent epimerase/dehydratase/0.493
2ztlNADD(-)-3-hydroxybutyrate dehydrogenase/0.492
3a4vNADNDP-sugar epimerase/0.492
2c54NADGDP-mannose 3,5-epimerase5.1.3.180.491
3a1nNADNDP-sugar epimerase/0.491
4bmsNAPAlclohol dehydrogenase/short-chain dehydrogenase/0.491
5ig2NADShort-chain dehydrogenase/reductase SDR/0.491
2q2vNADBeta-D-hydroxybutyrate dehydrogenase/0.490
3pgxNADUncharacterized NAD-dependent oxidoreductase MAP_4146/0.490
5js6NAD17-beta-hydroxysteroid dehydrogenase 141.1.10.489
1gesFADGlutathione reductase1.8.1.70.488
1ipeNDPTropinone reductase 21.1.1.2360.488
1zemNADXylitol dehydrogenase/0.488
1wntNAPL-xylulose reductase1.1.1.100.487
3wdsNADNADH-dependent quinuclidinone reductase/0.487
1mg5NAIAlcohol dehydrogenase1.1.1.10.486
4is3NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 21.17.98.10.486
4wloNAIMalate dehydrogenase, mitochondrial1.1.1.370.486
1b16NAQAlcohol dehydrogenase1.1.1.10.485
2zzcFADThioredoxin reductase 1, cytoplasmic1.8.1.90.485
3uoxFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.485
4yaiNAIC alpha-dehydrogenase/0.485
1nfrNAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.483
1p9wANPType II secretion system protein E/0.483
4hwkNAPSepiapterin reductase1.1.1.1530.483
5lc1NADL-threonine 3-dehydrogenase/0.483
1ht0NADAlcohol dehydrogenase 1C1.1.1.10.482
4h4yNAPBiphenyl dioxygenase ferredoxin reductase subunit/0.482
2c59NADGDP-mannose 3,5-epimerase5.1.3.180.481
3bhiNAPCarbonyl reductase [NADPH] 11.1.1.1840.481
3sx2NADUncharacterized protein/0.481
4ej0NAPADP-L-glycero-D-manno-heptose-6-epimerase/0.481
4iqgNAPShort-chain dehydrogenase/reductase SDR/0.481
2x86NAPADP-L-glycero-D-manno-heptose-6-epimerase/0.480
3ndrNADPyridoxal 4-dehydrogenase1.1.1.1070.479
3sjuNDPKeto reductase/0.479
1ydtIQBcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.478
2jahNDPClavaldehyde dehydrogenase/0.478
1edoNAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic1.1.1.1000.477
4fj0NAP17beta-hydroxysteroid dehydrogenase/0.477
3rj9NADAlcohol dehydrogenase1.1.1.10.476
3w8fNAD3-hydroxybutyrate dehydrogenase/0.476
2yy7NADL-threonine dehydrogenase/0.475
4i5eNAPAlclohol dehydrogenase/short-chain dehydrogenase/0.475
4idgNADPutative UDP-glucose 4-epimerase/0.475
1rwbNADGlucose 1-dehydrogenase1.1.1.470.474
3eheNADUDP-glucose 4-epimerase (GalE-1)/0.474
4fc7NAPPeroxisomal 2,4-dienoyl-CoA reductase1.3.1.340.474
4nbuNAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.474
4rf2NAPNADPH dependent R-specific alcohol dehydrogenase/0.474
4wlvNADMalate dehydrogenase, mitochondrial1.1.1.370.474
1oaaNAPSepiapterin reductase1.1.1.1530.473
1x7hNDPPutative ketoacyl reductase1.3.10.473
2vhwNAIAlanine dehydrogenase1.4.1.10.473
3ko8NADNAD-dependent epimerase/dehydratase/0.473
3l77NJPShort-chain alcohol dehydrogenase/0.473
4tlzFADKtzI/0.473
4z3dNDPCarbonyl reductase [NADPH] 11.1.1.1840.473
3tn7NJPShort-chain alcohol dehydrogenase/0.472
3vdqNAD3-hydroxybutyrate dehydrogenase/0.472
3zdfNADGlyceraldehyde-3-phosphate dehydrogenase/0.472
4bmvNAPShort-chain dehydrogenase/0.472
2ztmNADD(-)-3-hydroxybutyrate dehydrogenase/0.471
3ajrNADNDP-sugar epimerase/0.471
4gkvNADAlcohol dehydrogenase, propanol-preferring1.1.1.10.471
1hszNADAlcohol dehydrogenase 1B1.1.1.10.470
1vl8NAPOxidoreductase, short chain dehydrogenase/reductase family/0.470
3rkuNAPNADP-dependent 3-hydroxy acid dehydrogenase/0.470
1nzdUPGDNA beta-glucosyltransferase/0.469
2vhxNADAlanine dehydrogenase1.4.1.10.469
2zatNAPDehydrogenase/reductase SDR family member 41.1.1.1840.469
1fduNAPEstradiol 17-beta-dehydrogenase 11.1.1.620.468
2q85973UDP-N-acetylenolpyruvoylglucosamine reductase1.3.1.980.468
3qvtNAIMyo-inositol-1-phosphate synthase (Ino1)/0.468
2vojNADAlanine dehydrogenase1.4.1.10.467
2f7x4EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.466
2vhvNAIAlanine dehydrogenase1.4.1.10.466
3cgeFADCoenzyme A disulfide reductase/0.466
3nugNADPyridoxal 4-dehydrogenase1.1.1.1070.466
1b14NADAlcohol dehydrogenase1.1.1.10.465
3a9wNADNDP-sugar epimerase/0.465
3ox4NADAlcohol dehydrogenase 21.1.1.10.465
3qw4U5POrotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative/0.465
4fj2NAP17beta-hydroxysteroid dehydrogenase/0.465
1qyvNAPEstradiol 17-beta-dehydrogenase 11.1.1.620.464
3qv1NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.464
4tm0FADKtzI/0.464
1xg5NAPDehydrogenase/reductase SDR family member 11/0.463
3rj5NADAlcohol dehydrogenase1.1.1.10.463
3tjzGNPADP-ribosylation factor 1/0.463
4o0lNDPNADPH-dependent 3-quinuclidinone reductase/0.463
1hldNADAlcohol dehydrogenase E chain1.1.1.10.462
1naiNADUDP-glucose 4-epimerase5.1.3.20.462
1n7hNDPGDP-mannose 4,6 dehydratase 24.2.1.470.461
2wyvNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.461
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.461
1getFADGlutathione reductase1.8.1.70.460
1n7gNDPGDP-mannose 4,6 dehydratase 24.2.1.470.460
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.460
3ai2NDPNADPH-sorbose reductase/0.460
4m83ERYOleandomycin glycosyltransferase2.4.10.460
5a1tNAIL-lactate dehydrogenase/0.460
1b15NAEAlcohol dehydrogenase1.1.1.10.459
2gsdNADFormate dehydrogenase/0.459
2ydxNAPMethionine adenosyltransferase 2 subunit beta/0.459
2hrbNAPCarbonyl reductase [NADPH] 31.1.1.1840.458
3qrwNDPPutative ketoacyl reductase1.3.10.458
3te5NAI5'-AMP-activated protein kinase subunit gamma/0.458
4w6z8IDAlcohol dehydrogenase 11.1.1.10.458
1kolNADGlutathione-independent formaldehyde dehydrogenase/0.457
2ag5NAD3-hydroxybutyrate dehydrogenase type 2/0.457
2dphNADFormaldehyde dismutase/0.457
1ae1NAPTropinone reductase 1/0.456
1ldeNADAlcohol dehydrogenase E chain1.1.1.10.456
2vhzNAIAlanine dehydrogenase1.4.1.10.456
3m2vCOMMethyl-coenzyme M reductase I subunit alpha2.8.4.10.456
3up4FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.456
4oaqNDPR-specific carbonyl reductase/0.456
1h5qNAPNADP-dependent mannitol dehydrogenase1.1.1.1380.455
3v2uATPProtein GAL3/0.455
4dc1NDPPutative ketoacyl reductase1.3.10.455
2gjlFMNNitronate monooxygenase1.13.12.160.454
2zjaACPATP-dependent DNA helicase Hel308/0.454
3o4rNAPDehydrogenase/reductase SDR family member 41.1.1.1840.454
4dh60KNBeta-secretase 13.4.23.460.454
1g0nNDPTetrahydroxynaphthalene reductase1.1.1.2520.453
1gz4ATPNAD-dependent malic enzyme, mitochondrial1.1.1.380.453
1hdzNADAlcohol dehydrogenase 1B1.1.1.10.453
1mgoNADAlcohol dehydrogenase E chain1.1.1.10.453
1sowNADL-lactate dehydrogenase1.1.1.270.453
2rcyNAPPyrroline-5-carboxylate reductase/0.453
3aw9NADNAD-dependent epimerase/dehydratase/0.453
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.453
1gthFADDihydropyrimidine dehydrogenase [NADP(+)]1.3.1.20.452
1kvrNADUDP-glucose 4-epimerase5.1.3.20.452
1nqoNADGlyceraldehyde-3-phosphate dehydrogenase/0.452
1nytNAPShikimate dehydrogenase (NADP(+))/0.452
1t2aNDPGDP-mannose 4,6 dehydratase4.2.1.470.452
2hunNAD336aa long hypothetical dTDP-glucose 4,6-dehydratase/0.452
2z1mNDPGDP-mannose 4,6-dehydratase/0.452
3qvsNADMyo-inositol-1-phosphate synthase (Ino1)/0.452
4cpdNADAlcohol dehydrogenase/0.452
4g9kFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.452
4wluNADMalate dehydrogenase, mitochondrial1.1.1.370.452
1mbtFADUDP-N-acetylenolpyruvoylglucosamine reductase1.3.1.980.451
1u1iNADMyo-inositol-1-phosphate synthase (Ino1)/0.451
2qo9ANPEphrin type-A receptor 32.7.10.10.451
3hj9FMNUncharacterized protein/0.451
3pvzNADUDP-N-acetylglucosamine 4,6-dehydratase/0.451
4eu9COASuccinyl-CoA:acetate CoA-transferase/0.451
4la1FADThioredoxin glutathione reductase/0.451
1qorNDPQuinone oxidoreductase 1/0.450
1u8vFAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase/0.450
2is0I03Beta-secretase 13.4.23.460.450
3ggpNADPrephenate dehydrogenase/0.450
3gy0NAPNAD(P)-dependent oxidoreductase/0.450
1u3vNADAlcohol dehydrogenase 1B1.1.1.10.449
2ewmNAD(S)-1-Phenylethanol dehydrogenase1.1.1.3110.449
2nruT12Interleukin-1 receptor-associated kinase 42.7.11.10.449
3f3sNADLambda-crystallin homolog/0.449
1g6kNADGlucose 1-dehydrogenase1.1.1.470.448
1geuFADGlutathione reductase1.8.1.70.448
1xe55FEPlasmepsin-23.4.23.390.448
2g82NADGlyceraldehyde-3-phosphate dehydrogenase/0.448
2v7gNADUrocanate hydratase4.2.1.490.448
2zz0FADThioredoxin reductase 1, cytoplasmic1.8.1.90.448
4jjiNADAlcohol dehydrogenase class-3/0.448
5hwsNAP2-dehydropantoate 2-reductase/0.448
1snyNAPLD36273p/0.447
1xkqNDPUncharacterized protein/0.447
3cinNADMyo-inositol-1-phosphate synthase-related protein/0.447
3jv7NADSecondary alcohol dehydrogenase/0.447
3kjsNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.447
3pduNAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase/0.447
3uceNDPDehydrogenase/0.447
5kcpNAJAlcohol dehydrogenase E chain1.1.1.10.447
1k6tXN1Gag-Pol polyprotein3.4.23.160.446
3hx4ANPCalmodulin-domain protein kinase 1/0.446
4b69FADL-ornithine N(5)-monooxygenase/0.446
4h1m0YJProtein-tyrosine kinase 2-beta2.7.10.20.446
1bxkNADdTDP-glucose 4,6-dehydratase 2/0.445
1culFOKAdenylate cyclase type 2/0.445
1culFOKAdenylate cyclase type 5/0.445
1h2bNAJNAD-dependent alcohol dehydrogenase/0.445
2hjrAPRMalate dehydrogenase, adjacent gene encodes predicted lactate dehydrogenase/0.445
3c212BADNA integrity scanning protein DisA/0.445
3nxxNDPDihydrofolate reductase1.5.1.30.445
5mdhNADMalate dehydrogenase, cytoplasmic1.1.1.370.445
1b3rNADAdenosylhomocysteinase3.3.1.10.444
1j39UPGDNA beta-glucosyltransferase/0.444
1q6t600Tyrosine-protein phosphatase non-receptor type 13.1.3.480.444
1x7dNADPutative ornithine cyclodeaminase/0.444
2ejvNADL-threonine 3-dehydrogenase/0.444
3ai3NDPNADPH-sorbose reductase/0.444
4dwvNAJAlcohol dehydrogenase E chain1.1.1.10.444
4ipw1G7Mycocyclosin synthase1.14.21.90.444
4q71FADBifunctional protein PutA/0.444
1iqrFADDeoxyribodipyrimidine photo-lyase4.1.99.30.443
1t2dNADL-lactate dehydrogenase1.1.1.270.443
2xfsJ01Uncharacterized protein/0.443
2yy5WSATryptophan--tRNA ligase6.1.1.20.443
3apfBMWPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.443
3invNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.443
3kb1ADPIron-sulfur cluster carrier protein/0.443
3s5wFADL-ornithine N(5)-monooxygenase/0.443
4gh6LUOHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.443
4jnkZHKL-lactate dehydrogenase A chain1.1.1.270.443
4nesUD1UDP-N-acetylglucosamine 2-epimerase5.1.3.140.443
4opiFDAConserved Archaeal protein/0.443
2qjoNADBifunctional NMN adenylyltransferase/Nudix hydrolase2.7.7.10.442
2tmdADPTrimethylamine dehydrogenase1.5.8.20.442
2ztvNADD(-)-3-hydroxybutyrate dehydrogenase/0.442
3bmoNAPPteridine reductase/0.442
3ckqUPGGlucosyl-3-phosphoglycerate synthase2.4.1.2660.442
3hdyFADUDP-galactopyranose mutase/0.442
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.442
3tdj3TJGlutamate receptor 2/0.442
3w6uNAP6-phosphogluconate dehydrogenase, NAD-binding protein/0.442
4j1tNADNAD/NADP transhydrogenase alpha subunit 1/0.442
5kj6NAJAlcohol dehydrogenase E chain1.1.1.10.442
1c9k5GPBifunctional adenosylcobalamin biosynthesis protein CobU/0.441
1g1aNADdTDP-glucose 4,6-dehydratase/0.441
1kqnNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 12.7.7.10.441
1lm1FMNFerredoxin-dependent glutamate synthase 21.4.7.10.441
2q2qNADBeta-D-hydroxybutyrate dehydrogenase/0.441
3c1y2BADNA integrity scanning protein DisA/0.441
3wv7ADPHmd co-occurring protein HcgE/0.441
4ap1FADSteroid monooxygenase/0.441
4xd2NAIAlcohol dehydrogenase E chain1.1.1.10.441
1bp6UMPThymidylate synthase/0.440
1kqoDNDNicotinamide/nicotinic acid mononucleotide adenylyltransferase 12.7.7.10.440
2ivnANPtRNA N6-adenosine threonylcarbamoyltransferase/0.440
3ibqATPPyridoxal kinase/0.440
3inmNDPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.440
3mx2TTPNucleoprotein/0.440
3u4cNDPNADPH-dependent reductase BacG/0.440
3up5FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.440
4ajp88NL-lactate dehydrogenase A chain1.1.1.270.440
4b65FADL-ornithine N(5)-monooxygenase/0.440
4blrUTPNTPase P4/0.440
4gllNADUDP-glucuronic acid decarboxylase 14.1.1.350.440
4kp71UQ1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic1.1.1.2670.440