2.100 Å
X-ray
2008-01-24
Name: | DNA integrity scanning protein DisA |
---|---|
ID: | DISA_THEMA |
AC: | Q9WY43 |
Organism: | Thermotoga maritima |
Reign: | Bacteria |
TaxID: | 243274 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 52 % |
B | 48 % |
B-Factor: | 26.478 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.985 | 1377.000 |
% Hydrophobic | % Polar |
---|---|
35.78 | 64.22 |
According to VolSite |
HET Code: | 2BA |
---|---|
Formula: | C20H22N10O12P2 |
Molecular weight: | 656.396 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 61.93 % |
Polar Surface area: | 334.95 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 20 |
H-Bond Donors: | 4 |
Rings: | 7 |
Aromatic rings: | 4 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
67.4643 | 17.5274 | -39.7893 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2' | N | GLY- 76 | 2.88 | 157.63 | H-Bond (Protein Donor) |
O2'1 | N | GLY- 76 | 2.83 | 166.34 | H-Bond (Protein Donor) |
N6 | O | LEU- 94 | 2.66 | 163.84 | H-Bond (Ligand Donor) |
N61 | O | LEU- 94 | 2.9 | 175.92 | H-Bond (Ligand Donor) |
N1 | N | LEU- 94 | 3 | 159.72 | H-Bond (Protein Donor) |
N11 | N | LEU- 94 | 2.98 | 166.17 | H-Bond (Protein Donor) |
O1P | OG1 | THR- 107 | 2.64 | 165.23 | H-Bond (Ligand Donor) |
O1P1 | OG1 | THR- 107 | 2.52 | 164.46 | H-Bond (Protein Donor) |
N6 | OG1 | THR- 111 | 3.25 | 129.08 | H-Bond (Ligand Donor) |
N61 | OG1 | THR- 111 | 3.14 | 127.87 | H-Bond (Ligand Donor) |