Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Protein Data Bank Entry:

4fj0

2.200 Å

X-ray

2012-06-11

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:17beta-hydroxysteroid dehydrogenase
ID:O93874_COCLU
AC:O93874
Organism:Cochliobolus lunatus
Reign:Eukaryota
TaxID:5503
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
D100 %


Ligand binding site composition:

B-Factor:28.846
Number of residues:35
Including
Standard Amino Acids: 32
Non Standard Amino Acids: 1
Water Molecules: 2
Cofactors: NAP
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.321546.750

% Hydrophobic% Polar
66.6733.33
According to VolSite

Ligand :
4fj0_2 Structure
HET Code: HHF
Formula: C15H9O4
Molecular weight: 253.230 g/mol
DrugBank ID: -
Buried Surface Area:76.62 %
Polar Surface area: 69.59 Å2
Number of
H-Bond Acceptors: 4
H-Bond Donors: 1
Rings: 3
Aromatic rings: 2
Anionic atoms: 1
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 1

Mass center Coordinates

XYZ
16.4706-5.092054.76916


Binding mode :
What is Poseview ?
  • 2D View
  • 3D View
Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
OABOD1ASN- 1542.51168.75H-Bond
(Ligand Donor)
CAMCG2THR- 1553.980Hydrophobic
OACOPHE- 2053.41140.35H-Bond
(Ligand Donor)
CAHCBSER- 2093.920Hydrophobic
CANCGTYR- 2123.460Hydrophobic
CASCZTYR- 2123.310Hydrophobic
CANCBTYR- 2123.60Hydrophobic
CADCG1ILE- 2134.070Hydrophobic
CADCBALA- 2283.560Hydrophobic