sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4dls | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4dls | GNP | GTPase HRas | / | 1.208 | |
| 3v4f | GNP | GTPase HRas | / | 1.182 | |
| 3rs4 | GNP | GTPase HRas | / | 1.181 | |
| 3rs5 | GNP | GTPase HRas | / | 1.181 | |
| 3rs7 | GNP | GTPase HRas | / | 1.181 | |
| 4dlw | GNP | GTPase HRas | / | 1.181 | |
| 4dlz | GNP | GTPase HRas | / | 1.180 | |
| 5b2z | GNP | GTPase HRas | / | 1.179 | |
| 4dlx | GNP | GTPase HRas | / | 1.178 | |
| 3lbi | GNP | GTPase HRas | / | 1.166 | |
| 3oiu | GNP | GTPase HRas | / | 1.165 | |
| 3k8y | GNP | GTPase HRas | / | 1.164 | |
| 4dlt | GNP | GTPase HRas | / | 1.164 | |
| 3i3s | GNP | GTPase HRas | / | 1.163 | |
| 3rsl | GNP | GTPase HRas | / | 1.163 | |
| 4dlv | GNP | GTPase HRas | / | 1.163 | |
| 4l9w | GNP | GTPase HRas | / | 1.163 | |
| 3lbn | GNP | GTPase HRas | / | 1.162 | |
| 3rs0 | GNP | GTPase HRas | / | 1.162 | |
| 3l8y | GNP | GTPase HRas | / | 1.161 | |
| 2rgc | GNP | GTPase HRas | / | 1.160 | |
| 2rgb | GNP | GTPase HRas | / | 1.146 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.131 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.129 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.119 | |
| 4dsn | GCP | GTPase KRas | / | 1.119 | |
| 3oiw | GNP | GTPase HRas | / | 1.118 | |
| 2rge | GNP | GTPase HRas | / | 1.115 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.108 | |
| 4nyj | GNP | GTPase HRas | / | 1.098 | |
| 3oiv | GNP | GTPase HRas | / | 1.097 | |
| 4nyi | GNP | GTPase HRas | / | 1.093 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.089 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.088 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.087 | |
| 3ddc | GNP | GTPase HRas | / | 1.084 | |
| 2rgg | GNP | GTPase HRas | / | 1.079 | |
| 2c5l | GTP | GTPase HRas | / | 1.078 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.069 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.065 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.054 | |
| 4dso | GSP | GTPase KRas | / | 1.054 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.048 | |
| 3k9l | GNP | GTPase HRas | / | 1.043 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.042 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.034 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.033 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.031 | |
| 3tgp | GNP | GTPase HRas | / | 1.029 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 1.026 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.024 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 1.023 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 1.017 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.011 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 1.009 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 1.009 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 1.007 | |
| 4k81 | GTP | GTPase HRas | / | 1.007 | |
| 4xvq | GNP | GTPase HRas | / | 1.007 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.006 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.003 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.002 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.993 | |
| 4xvr | GNP | GTPase HRas | / | 0.989 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.988 | |
| 4mit | GTP | Rho-related protein racC | / | 0.988 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 0.987 | |
| 3lbh | GNP | GTPase HRas | / | 0.983 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.981 | |
| 3kud | GDP | GTPase HRas | / | 0.981 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.974 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.974 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 0.970 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.969 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 0.968 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.968 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 0.968 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.965 | |
| 4q03 | GDP | GTPase KRas | / | 0.964 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.963 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.963 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.956 | |
| 1lfd | GNP | GTPase HRas | / | 0.955 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.950 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.949 | |
| 4dsu | GDP | GTPase KRas | / | 0.949 | |
| 4wa7 | GDP | GTPase KRas | / | 0.948 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.947 | |
| 4ql3 | GDP | GTPase KRas | / | 0.947 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.946 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.943 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.942 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.940 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.939 | |
| 4g0n | GNP | GTPase HRas | / | 0.938 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.937 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.935 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.935 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.934 | |
| 4lv6 | GDP | GTPase KRas | / | 0.934 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.933 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.932 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.931 | |
| 2ce2 | GDP | GTPase HRas | / | 0.931 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.930 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.929 | |
| 4q02 | GDP | GTPase KRas | / | 0.929 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.929 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.928 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.927 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.926 | |
| 4epx | GDP | GTPase KRas | / | 0.926 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.924 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.919 | |
| 4l9s | GDP | GTPase HRas | / | 0.919 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.917 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.917 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.916 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.916 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.916 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.915 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.913 | |
| 4ldj | GDP | GTPase KRas | / | 0.911 | |
| 4tq9 | GDP | GTPase KRas | / | 0.911 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.910 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.907 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.907 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.907 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.907 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.906 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.906 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.903 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.903 | |
| 4epw | GDP | GTPase KRas | / | 0.902 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.900 | |
| 4l8g | GDP | GTPase KRas | / | 0.900 | |
| 3r9x | GNP | GTPase Era | / | 0.892 | |
| 4dvg | GSP | Rho family GTPase | / | 0.890 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.889 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.884 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.882 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.882 | |
| 4luc | GDP | GTPase KRas | / | 0.882 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.881 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.880 | |
| 4obe | GDP | GTPase KRas | / | 0.877 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.876 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.875 | |
| 3ftq | GNP | Septin-2 | / | 0.874 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.873 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.873 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.870 | |
| 4lpk | GDP | GTPase KRas | / | 0.870 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.864 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.863 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.863 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.862 | |
| 2cl6 | CAG | GTPase HRas | / | 0.862 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.857 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.856 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.856 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.854 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.853 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.852 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.850 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.850 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.849 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.846 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.846 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.843 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.842 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.842 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.841 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.839 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.839 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.839 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.838 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.838 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.838 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.836 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.833 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.830 | |
| 4db1 | ANP | Myosin-7 | / | 0.827 | |
| 3ref | GDP | Rho family GTPase | / | 0.826 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.826 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.825 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.822 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.819 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.818 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.817 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.817 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.815 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.814 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.813 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.813 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.811 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.810 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.808 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.806 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.806 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.806 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.805 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.802 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.801 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.800 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.799 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.798 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.798 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.796 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.796 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.793 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.792 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.789 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.789 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.787 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.786 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.785 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.785 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.785 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.784 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.781 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.781 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.776 | |
| 1ank | ANP | Adenylate kinase | / | 0.773 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.773 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.773 | |
| 4lrw | GDP | GTPase KRas | / | 0.773 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.772 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.772 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.772 | |
| 2fna | ADP | Uncharacterized protein | / | 0.770 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.769 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.769 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.769 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.767 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.766 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.765 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.764 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.764 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.763 | |
| 5cyo | GDP | Septin-9 | / | 0.763 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.761 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.761 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.760 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.759 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.759 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.759 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.758 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.757 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.757 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.757 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.756 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.755 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.754 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.752 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.752 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.752 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.752 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.752 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.752 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.752 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.752 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.752 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.751 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.751 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.751 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.751 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.750 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.750 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.750 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.750 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.750 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.750 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.749 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.749 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.749 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.749 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.747 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.747 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.747 | |
| 5bn3 | ADP | NEQ263 | / | 0.747 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.745 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.745 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.744 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.744 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.744 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.744 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.742 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.742 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.741 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.741 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.740 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.738 | |
| 1xms | ANP | Protein RecA | / | 0.738 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.738 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.737 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.737 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.737 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.737 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.737 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.737 | |
| 4v02 | ATP | Site-determining protein | / | 0.737 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.736 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.735 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.735 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.735 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.735 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.734 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.734 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.734 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.734 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.734 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.733 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.731 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.731 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.731 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.731 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.731 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.730 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.729 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.728 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.727 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.727 | |
| 4yqf | GDP | Septin-9 | / | 0.727 | |
| 2zts | ADP | Uncharacterized protein | / | 0.725 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.725 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.724 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.724 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.724 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.724 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.723 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.723 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.723 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.722 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.722 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.722 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.721 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.720 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.719 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.719 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.718 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.718 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.718 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.718 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.717 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.717 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.717 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.717 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.716 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.716 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.715 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.715 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.714 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.714 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.712 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.711 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.711 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.711 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.710 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.709 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.709 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.709 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.708 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.708 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.707 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.706 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.706 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.703 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.702 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.701 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.699 | |
| 4jlo | ADP | Adenylate kinase | / | 0.698 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.697 | |
| 4jld | ADP | Adenylate kinase | / | 0.697 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.696 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.696 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.696 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.695 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.695 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.694 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.694 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.693 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.693 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.692 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.692 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.692 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.691 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.690 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.689 | |
| 2r6g | ATP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.688 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.688 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.688 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.687 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.687 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.687 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.686 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.686 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.685 | |
| 3hpr | AP5 | Adenylate kinase | / | 0.685 | |
| 4ymu | ATP | ABC-type polar amino acid transport system, ATPase component | / | 0.685 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.684 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.683 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.683 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.683 | |
| 2eck | ADP | Adenylate kinase | / | 0.682 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.682 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.681 | |
| 3l1c | ADP | Protein claret segregational | / | 0.680 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.678 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.677 | |
| 1ss9 | UPF | LgtC | / | 0.677 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.677 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.677 | |
| 4ike | ADP | Adenylate kinase | / | 0.677 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.677 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.676 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.676 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.676 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.675 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.675 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.675 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.675 | |
| 4c30 | ANP | DNA helicase | / | 0.675 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.674 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA2 | 3.6.3 | 0.674 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA1 | / | 0.674 | |
| 1zm7 | TTP | Deoxynucleoside kinase | / | 0.673 | |
| 2q2y | ADP | Kinesin-like protein KIF11 | / | 0.673 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.673 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.672 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.672 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.671 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.670 | |
| 1g6o | ADP | Cag alpha | / | 0.669 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.669 | |
| 2zro | ADP | Protein RecA | / | 0.669 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.668 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.667 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.667 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.666 | |
| 4iij | GTP | Tubulin alpha-1B chain | / | 0.666 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.665 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.665 | |
| 3sop | GDP | Neuronal-specific septin-3 | / | 0.665 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.663 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.662 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.662 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.661 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.660 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.660 | |
| 2zrj | AGS | Protein RecA | / | 0.659 | |
| 4e2z | JHZ | Methyltransferase | / | 0.659 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.658 | |
| 2jcs | TTP | Deoxynucleoside kinase | / | 0.657 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.657 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.656 | |
| 2a84 | ATP | Pantothenate synthetase | 6.3.2.1 | 0.655 | |
| 4ohw | ATP | Protein clpf-1 | / | 0.655 | |
| 1nly | AGS | Cag alpha | / | 0.654 | |
| 2xsz | ATP | RuvB-like 2 | 3.6.4.12 | 0.654 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.653 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.653 | |
| 4jky | ADP | Adenylate kinase | / | 0.652 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.650 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.650 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.650 |