sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3k8y | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3k8y | GNP | GTPase HRas | / | 1.225 | |
| 3i3s | GNP | GTPase HRas | / | 1.221 | |
| 3lbi | GNP | GTPase HRas | / | 1.217 | |
| 3rs4 | GNP | GTPase HRas | / | 1.215 | |
| 3rs7 | GNP | GTPase HRas | / | 1.215 | |
| 4dlz | GNP | GTPase HRas | / | 1.212 | |
| 4g0n | GNP | GTPase HRas | / | 1.210 | |
| 3oiw | GNP | GTPase HRas | / | 1.200 | |
| 3rs0 | GNP | GTPase HRas | / | 1.200 | |
| 3rsl | GNP | GTPase HRas | / | 1.200 | |
| 3lbn | GNP | GTPase HRas | / | 1.199 | |
| 4l9w | GNP | GTPase HRas | / | 1.199 | |
| 4dlt | GNP | GTPase HRas | / | 1.197 | |
| 4dlx | GNP | GTPase HRas | / | 1.197 | |
| 4dlv | GNP | GTPase HRas | / | 1.196 | |
| 2rgc | GNP | GTPase HRas | / | 1.193 | |
| 2rge | GNP | GTPase HRas | / | 1.188 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.188 | |
| 3rs5 | GNP | GTPase HRas | / | 1.188 | |
| 3lbh | GNP | GTPase HRas | / | 1.185 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.182 | |
| 3l8y | GNP | GTPase HRas | / | 1.180 | |
| 3oiv | GNP | GTPase HRas | / | 1.180 | |
| 3v4f | GNP | GTPase HRas | / | 1.180 | |
| 5b2z | GNP | GTPase HRas | / | 1.178 | |
| 4dlw | GNP | GTPase HRas | / | 1.171 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.169 | |
| 3ddc | GNP | GTPase HRas | / | 1.166 | |
| 4dls | GNP | GTPase HRas | / | 1.164 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.164 | |
| 3oiu | GNP | GTPase HRas | / | 1.163 | |
| 4nyj | GNP | GTPase HRas | / | 1.149 | |
| 2c5l | GTP | GTPase HRas | / | 1.145 | |
| 2rgb | GNP | GTPase HRas | / | 1.144 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.144 | |
| 4dsn | GCP | GTPase KRas | / | 1.135 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.132 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.121 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.119 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.116 | |
| 3k9l | GNP | GTPase HRas | / | 1.113 | |
| 4nyi | GNP | GTPase HRas | / | 1.107 | |
| 4k81 | GTP | GTPase HRas | / | 1.104 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.080 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.076 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.076 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.074 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.071 | |
| 2rgg | GNP | GTPase HRas | / | 1.068 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.056 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.052 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.050 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.050 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.048 | |
| 3tgp | GNP | GTPase HRas | / | 1.046 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 1.040 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.039 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.036 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.035 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.032 | |
| 4dso | GSP | GTPase KRas | / | 1.032 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.025 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.020 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 1.020 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.019 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.017 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.012 | |
| 4xvq | GNP | GTPase HRas | / | 1.010 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.005 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 1.001 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 1.000 | |
| 4xoi | GTP | Transforming protein RhoA | / | 1.000 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.997 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.995 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.993 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.986 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.985 | |
| 4mit | GTP | Rho-related protein racC | / | 0.984 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.983 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.980 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.979 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.974 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.971 | |
| 2ce2 | GDP | GTPase HRas | / | 0.967 | |
| 4ql3 | GDP | GTPase KRas | / | 0.966 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.964 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.964 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.959 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.959 | |
| 1lfd | GNP | GTPase HRas | / | 0.957 | |
| 4l9s | GDP | GTPase HRas | / | 0.955 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.954 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.953 | |
| 4wa7 | GDP | GTPase KRas | / | 0.950 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.948 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.948 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.946 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.943 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.942 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.940 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.939 | |
| 2cl6 | CAG | GTPase HRas | / | 0.939 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.937 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.936 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.936 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.934 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.933 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.933 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.931 | |
| 4q02 | GDP | GTPase KRas | / | 0.930 | |
| 4tq9 | GDP | GTPase KRas | / | 0.930 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.929 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.929 | |
| 4epx | GDP | GTPase KRas | / | 0.926 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.924 | |
| 4l8g | GDP | GTPase KRas | / | 0.923 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.919 | |
| 4dvg | GSP | Rho family GTPase | / | 0.916 | |
| 4xvr | GNP | GTPase HRas | / | 0.916 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.915 | |
| 4epw | GDP | GTPase KRas | / | 0.915 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.914 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.914 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.913 | |
| 4q03 | GDP | GTPase KRas | / | 0.912 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.910 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.910 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.910 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.903 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.903 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.903 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.903 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.902 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.902 | |
| 4lv6 | GDP | GTPase KRas | / | 0.900 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.896 | |
| 4ldj | GDP | GTPase KRas | / | 0.896 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.896 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.893 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.893 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.891 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.888 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.888 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.886 | |
| 4obe | GDP | GTPase KRas | / | 0.881 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.880 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.880 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.880 | |
| 3r9x | GNP | GTPase Era | / | 0.880 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.880 | |
| 4dsu | GDP | GTPase KRas | / | 0.879 | |
| 4lpk | GDP | GTPase KRas | / | 0.877 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.876 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.871 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.869 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.868 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.865 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.864 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.864 | |
| 4lrw | GDP | GTPase KRas | / | 0.861 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.859 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.857 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.857 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.856 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.850 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.850 | |
| 4luc | GDP | GTPase KRas | / | 0.850 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.848 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.847 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.844 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.844 | |
| 3ftq | GNP | Septin-2 | / | 0.842 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.838 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.838 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.837 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.836 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.833 | |
| 3ref | GDP | Rho family GTPase | / | 0.831 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.830 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.829 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.828 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.828 | |
| 4db1 | ANP | Myosin-7 | / | 0.826 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.826 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.824 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.824 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.824 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.824 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.822 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.822 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.822 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.821 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.819 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.819 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.817 | |
| 3kud | GDP | GTPase HRas | / | 0.815 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.814 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.813 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.811 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.810 | |
| 5bn3 | ADP | NEQ263 | / | 0.810 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.808 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.808 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.808 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.808 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.805 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.803 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.803 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.802 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.801 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.801 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.799 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.799 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.796 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.795 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.793 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.789 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.789 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.788 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.782 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.782 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.781 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.780 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.780 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.780 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.779 | |
| 1ank | ANP | Adenylate kinase | / | 0.775 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.774 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.774 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.774 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.773 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.772 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.772 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.772 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.771 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.769 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.769 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.769 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.768 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.766 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.766 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.766 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.766 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.763 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.763 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.761 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.761 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.761 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.760 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.757 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.757 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.757 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.757 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.757 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.756 | |
| 2fna | ADP | Uncharacterized protein | / | 0.756 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.756 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.755 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.755 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.754 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.753 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.753 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.753 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.752 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.751 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.751 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.751 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.750 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.750 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.750 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.747 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.747 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.747 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.744 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.744 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.744 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.744 | |
| 5cyo | GDP | Septin-9 | / | 0.744 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.743 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.742 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.742 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.741 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.740 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.739 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.739 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.738 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.738 | |
| 1xms | ANP | Protein RecA | / | 0.738 | |
| 4v02 | ATP | Site-determining protein | / | 0.738 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.737 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.736 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.736 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.736 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.736 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.736 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.736 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.735 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.734 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.734 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.731 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.731 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.729 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.729 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.729 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.729 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.729 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.727 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.727 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.727 | |
| 1xmv | ADP | Protein RecA | / | 0.726 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.726 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.726 | |
| 2zts | ADP | Uncharacterized protein | / | 0.725 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.725 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.724 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.724 | |
| 4jlo | ADP | Adenylate kinase | / | 0.724 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.722 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.722 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.722 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.721 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.720 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.720 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.720 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.719 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.719 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.718 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.718 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.718 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.718 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.718 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.717 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.717 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.717 | |
| 4yqf | GDP | Septin-9 | / | 0.717 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.717 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.716 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.715 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.715 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.715 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.714 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.714 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.714 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.714 | |
| 3hpr | AP5 | Adenylate kinase | / | 0.713 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.713 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.713 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.710 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.710 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.710 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.710 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.710 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.710 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.709 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.708 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.708 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.708 | |
| 1nly | AGS | Cag alpha | / | 0.707 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.707 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.707 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.706 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.705 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.705 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.704 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.704 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.704 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.703 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.703 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.703 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.703 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.702 | |
| 4ike | ADP | Adenylate kinase | / | 0.701 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.699 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.699 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.698 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.698 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.698 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.697 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.697 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.695 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.694 | |
| 2eck | ADP | Adenylate kinase | / | 0.694 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.694 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.693 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.693 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.692 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.692 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.690 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.690 | |
| 4c30 | ANP | DNA helicase | / | 0.690 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.690 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.689 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.689 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.688 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.688 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.687 | |
| 2axn | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | / | 0.686 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.685 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.685 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.684 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.684 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.682 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.681 | |
| 5dac | AGS | Uncharacterized protein | / | 0.681 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.680 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.680 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.680 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.679 | |
| 2xsz | ATP | RuvB-like 2 | 3.6.4.12 | 0.679 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.678 | |
| 4pl0 | ANP | Microcin-J25 export ATP-binding/permease protein McjD | / | 0.678 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.677 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.676 | |
| 2vp0 | TTP | Deoxynucleoside kinase | / | 0.676 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.675 | |
| 1ake | AP5 | Adenylate kinase | / | 0.674 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.674 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.674 | |
| 4e03 | ADP | Plasmid partitioning protein ParF | / | 0.674 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.672 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.671 | |
| 1g6o | ADP | Cag alpha | / | 0.670 | |
| 1zm7 | TTP | Deoxynucleoside kinase | / | 0.670 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.669 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.669 | |
| 2ad5 | ADP | CTP synthase | / | 0.669 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.669 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.669 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.667 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.667 | |
| 1dvr | ATF | Adenylate kinase | / | 0.666 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.666 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.665 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.665 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.664 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.661 | |
| 3hpq | AP5 | Adenylate kinase | / | 0.660 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.660 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.659 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.657 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.655 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.655 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.655 | |
| 1dj3 | GDP | Adenylosuccinate synthetase, chloroplastic | / | 0.654 | |
| 5fm6 | ADP | RuvB-like helicase | / | 0.654 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.653 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.651 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.650 | |
| 1um8 | ADP | ATP-dependent Clp protease ATP-binding subunit ClpX | / | 0.650 | |
| 2q9c | GNP | Signal recognition particle receptor FtsY | / | 0.650 |