sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1yu9 | GNP | Ras-related protein Rab-4A |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 1.179 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.075 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.069 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.069 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.059 | |
| 4dlz | GNP | GTPase HRas | / | 1.041 | |
| 4dlx | GNP | GTPase HRas | / | 1.040 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 1.039 | |
| 3k9l | GNP | GTPase HRas | / | 1.039 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.036 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 1.034 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.032 | |
| 4g0n | GNP | GTPase HRas | / | 1.029 | |
| 4dls | GNP | GTPase HRas | / | 1.026 | |
| 3lbi | GNP | GTPase HRas | / | 1.022 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.021 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.016 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.015 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.011 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.010 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.009 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 1.009 | |
| 3rsl | GNP | GTPase HRas | / | 1.008 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 1.008 | |
| 5b2z | GNP | GTPase HRas | / | 1.008 | |
| 3oiu | GNP | GTPase HRas | / | 1.006 | |
| 3v4f | GNP | GTPase HRas | / | 1.006 | |
| 4xvq | GNP | GTPase HRas | / | 1.006 | |
| 4dlt | GNP | GTPase HRas | / | 1.005 | |
| 4dlw | GNP | GTPase HRas | / | 1.005 | |
| 3l8y | GNP | GTPase HRas | / | 1.003 | |
| 4dlv | GNP | GTPase HRas | / | 1.002 | |
| 2rgc | GNP | GTPase HRas | / | 0.999 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 0.999 | |
| 3rs4 | GNP | GTPase HRas | / | 0.998 | |
| 4dso | GSP | GTPase KRas | / | 0.997 | |
| 4xvr | GNP | GTPase HRas | / | 0.996 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 0.995 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 0.994 | |
| 3rs7 | GNP | GTPase HRas | / | 0.993 | |
| 2rge | GNP | GTPase HRas | / | 0.991 | |
| 3tgp | GNP | GTPase HRas | / | 0.991 | |
| 3rs0 | GNP | GTPase HRas | / | 0.990 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.989 | |
| 3i3s | GNP | GTPase HRas | / | 0.989 | |
| 3oiw | GNP | GTPase HRas | / | 0.989 | |
| 2rgb | GNP | GTPase HRas | / | 0.988 | |
| 3lbn | GNP | GTPase HRas | / | 0.985 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.983 | |
| 4k81 | GTP | GTPase HRas | / | 0.981 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.980 | |
| 3k8y | GNP | GTPase HRas | / | 0.979 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.978 | |
| 3rs5 | GNP | GTPase HRas | / | 0.978 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.976 | |
| 4l9w | GNP | GTPase HRas | / | 0.976 | |
| 2rgg | GNP | GTPase HRas | / | 0.974 | |
| 4nyj | GNP | GTPase HRas | / | 0.974 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.974 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 0.973 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.971 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.969 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.967 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.965 | |
| 3oiv | GNP | GTPase HRas | / | 0.964 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.964 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 0.963 | |
| 4dvg | GSP | Rho family GTPase | / | 0.963 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.963 | |
| 3ddc | GNP | GTPase HRas | / | 0.961 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.961 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 0.958 | |
| 3lbh | GNP | GTPase HRas | / | 0.954 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.953 | |
| 2c5l | GTP | GTPase HRas | / | 0.952 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.952 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.952 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.946 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.946 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.945 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.943 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.942 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.939 | |
| 4mit | GTP | Rho-related protein racC | / | 0.937 | |
| 4nyi | GNP | GTPase HRas | / | 0.937 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.936 | |
| 1lfd | GNP | GTPase HRas | / | 0.935 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.934 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.930 | |
| 4q03 | GDP | GTPase KRas | / | 0.930 | |
| 4dsn | GCP | GTPase KRas | / | 0.928 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.926 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.923 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.922 | |
| 4wa7 | GDP | GTPase KRas | / | 0.922 | |
| 4dsu | GDP | GTPase KRas | / | 0.921 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.918 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.917 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.917 | |
| 2ce2 | GDP | GTPase HRas | / | 0.916 | |
| 4tq9 | GDP | GTPase KRas | / | 0.916 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.915 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.915 | |
| 3kud | GDP | GTPase HRas | / | 0.915 | |
| 4epx | GDP | GTPase KRas | / | 0.915 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.913 | |
| 3r9x | GNP | GTPase Era | / | 0.913 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.912 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.910 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.907 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.900 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.899 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.899 | |
| 4lv6 | GDP | GTPase KRas | / | 0.899 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.899 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.898 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.898 | |
| 4ldj | GDP | GTPase KRas | / | 0.897 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.896 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.895 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.893 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.892 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.889 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.888 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.884 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.883 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.883 | |
| 4ql3 | GDP | GTPase KRas | / | 0.882 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.880 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.880 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.879 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.878 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.878 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.877 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.877 | |
| 3ftq | GNP | Septin-2 | / | 0.876 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.876 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.875 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.874 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.872 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.869 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.868 | |
| 4l9s | GDP | GTPase HRas | / | 0.868 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.867 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.867 | |
| 4epw | GDP | GTPase KRas | / | 0.866 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.865 | |
| 3ref | GDP | Rho family GTPase | / | 0.863 | |
| 4obe | GDP | GTPase KRas | / | 0.863 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.862 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.862 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.861 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.859 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.859 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.858 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.857 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.857 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.855 | |
| 2cl6 | CAG | GTPase HRas | / | 0.852 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.851 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.851 | |
| 4luc | GDP | GTPase KRas | / | 0.851 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.848 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.847 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.845 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.845 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.844 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.840 | |
| 4lpk | GDP | GTPase KRas | / | 0.840 | |
| 4q02 | GDP | GTPase KRas | / | 0.840 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.835 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.835 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.834 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.834 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.831 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.829 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.828 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.827 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.827 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.821 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.821 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.821 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.821 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.820 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.818 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.818 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.816 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.815 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.814 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.810 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.810 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.808 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.808 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.807 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.806 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.806 | |
| 4l8g | GDP | GTPase KRas | / | 0.805 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.802 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.801 | |
| 4lrw | GDP | GTPase KRas | / | 0.801 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.800 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.800 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.800 | |
| 4xvu | ATP | ATPase GET3 | / | 0.799 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.798 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.798 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.796 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.794 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.792 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.786 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.786 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.785 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.785 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.785 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.784 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.784 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.783 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.782 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.779 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.778 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.778 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.777 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.776 | |
| 1ank | ANP | Adenylate kinase | / | 0.775 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.775 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.775 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.774 | |
| 4db1 | ANP | Myosin-7 | / | 0.774 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.773 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.773 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.773 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.772 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.772 | |
| 5bn3 | ADP | NEQ263 | / | 0.772 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.771 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.771 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.768 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.767 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.765 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.765 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.764 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.763 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.763 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.762 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.762 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.761 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.760 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.760 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.760 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.758 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.757 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.756 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.756 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.756 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.756 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.756 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.755 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.754 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.753 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.753 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.753 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.752 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.751 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.751 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.750 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.750 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.750 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.750 | |
| 4yqf | GDP | Septin-9 | / | 0.750 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.748 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.747 | |
| 5cyo | GDP | Septin-9 | / | 0.747 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.746 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.746 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.744 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.744 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.744 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.743 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.743 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.743 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.743 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.742 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.742 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.742 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.742 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.741 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.741 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.740 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.740 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.740 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.739 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.739 | |
| 2fna | ADP | Uncharacterized protein | / | 0.739 | |
| 4v02 | ATP | Site-determining protein | / | 0.739 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.738 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.738 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.738 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.737 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.736 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.736 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.735 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.734 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.734 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.734 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.733 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.733 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.733 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.733 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.730 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.729 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.729 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.728 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.728 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.727 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.727 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.727 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.726 | |
| 3ieu | GDP | GTPase Era | / | 0.726 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.726 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.725 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.725 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.725 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.725 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.724 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.722 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.722 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.722 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.721 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.721 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.721 | |
| 4x8l | AP5 | Adenylate kinase | / | 0.720 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.719 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.719 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.719 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.718 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.718 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.718 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.717 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.717 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.717 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.716 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.716 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.715 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.715 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.715 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.715 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.714 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.714 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.713 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.713 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.713 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.713 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.711 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.711 | |
| 2zts | ADP | Uncharacterized protein | / | 0.710 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.709 | |
| 2osb | AP5 | Adenylate kinase | / | 0.709 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.709 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.708 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.708 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.708 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.706 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.706 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.706 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.706 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.705 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.705 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.704 | |
| 5ftc | ADP | TPR domain protein | / | 0.704 | |
| 1xms | ANP | Protein RecA | / | 0.703 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.703 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.703 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.703 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.702 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.702 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.701 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.701 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.701 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.701 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.701 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.701 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.701 | |
| 4jky | ADP | Adenylate kinase | / | 0.700 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.699 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.699 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.699 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.699 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.699 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.698 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.698 | |
| 4jld | ADP | Adenylate kinase | / | 0.698 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.697 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.697 | |
| 1zm7 | TTP | Deoxynucleoside kinase | / | 0.697 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.697 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.696 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.696 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.696 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.696 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.695 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.694 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.694 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.694 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.694 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.694 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.694 | |
| 2jcs | TTP | Deoxynucleoside kinase | / | 0.693 | |
| 4x8o | AP5 | Adenylate kinase | / | 0.693 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.692 | |
| 1nly | AGS | Cag alpha | / | 0.691 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.691 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.691 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.688 | |
| 4jlo | ADP | Adenylate kinase | / | 0.688 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.688 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.687 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.687 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.686 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.685 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.685 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.685 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.683 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.682 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.682 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.681 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.680 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.680 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.678 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.676 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.674 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.672 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.672 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.670 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA2 | 3.6.3 | 0.670 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA1 | / | 0.670 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.669 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.669 | |
| 3qpv | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.669 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.668 | |
| 4c30 | ANP | DNA helicase | / | 0.668 | |
| 3ez6 | ADP | Plasmid partition protein A | / | 0.667 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.666 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.666 | |
| 4h1v | GNP | Dynamin-1-like protein | 3.6.5.5 | 0.666 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.664 | |
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.663 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.663 | |
| 3l1c | ADP | Protein claret segregational | / | 0.662 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.662 | |
| 4kqs | RIS | Farnesyl pyrophosphate synthase | 2.5.1.10 | 0.659 | |
| 4ma4 | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.659 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.658 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.658 | |
| 4cdg | ADP | Bloom syndrome protein | 3.6.4.12 | 0.657 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.656 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.656 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.656 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.656 | |
| 5ftf | ADP | TPR domain protein | / | 0.656 | |
| 2vp4 | DCP | Deoxynucleoside kinase | / | 0.655 | |
| 1w7i | ADP | Unconventional myosin-Va | / | 0.654 | |
| 4rz3 | ADP | Site-determining protein | / | 0.654 | |
| 1g6o | ADP | Cag alpha | / | 0.653 | |
| 1ndc | TYD | Nucleoside diphosphate kinase, cytosolic | 2.7.4.6 | 0.653 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.653 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.653 | |
| 3r7w | GNP | GTP-binding protein GTR2 | / | 0.652 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.651 | |
| 2xsz | ATP | RuvB-like 2 | 3.6.4.12 | 0.650 |