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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1v0j FAD UDP-galactopyranose mutase 5.4.99.9

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1v0j FADUDP-galactopyranose mutase 5.4.99.9 1.406
5br7 FADUDP-galactopyranose mutase / 1.070
4rpg FADUDP-galactopyranose mutase 5.4.99.9 0.882
3mj4 FADUDP-galactopyranose mutase / 0.865
3he3 FADUDP-galactopyranose mutase / 0.856
4mo2 FADUDP-galactopyranose mutase / 0.825
2bi7 FADUDP-galactopyranose mutase 5.4.99.9 0.808
2yg5 FADPutrescine oxidase / 0.804
4gde FDAUDP-galactopyranose mutase / 0.799
1i8t FADUDP-galactopyranose mutase 5.4.99.9 0.790
4dsh FDAUncharacterized protein / 0.787
4rpj FADUDP-galactopyranose mutase 5.4.99.9 0.786
4mo2 FDAUDP-galactopyranose mutase / 0.782
1wam FADUDP-galactopyranose mutase 5.4.99.9 0.780
2bi8 FADUDP-galactopyranose mutase 5.4.99.9 0.779
3uka FADUDP-galactopyranose mutase / 0.779
2q7v FADThioredoxin reductase / 0.778
3k7m FAD6-hydroxy-L-nicotine oxidase / 0.778
4gdp FADPolyamine oxidase FMS1 / 0.775
3ish FADThioredoxin reductase 1.8.1.9 0.772
4wx1 FDAUDP-galactopyranose mutase / 0.772
4u8m FDAUDP-galactopyranose mutase / 0.771
3int FDAUDP-galactopyranose mutase 5.4.99.9 0.770
4u8k FDAUDP-galactopyranose mutase / 0.769
4dsg FADUncharacterized protein / 0.767
3kyb FADUDP-galactopyranose mutase 5.4.99.9 0.765
4rph FADUDP-galactopyranose mutase 5.4.99.9 0.764
4fwf FADLysine-specific histone demethylase 1B 1 0.763
2yg4 FADPutrescine oxidase / 0.762
3hdy FADUDP-galactopyranose mutase / 0.762
4u8i FDAUDP-galactopyranose mutase / 0.762
2jb2 FADL-amino acid oxidase / 0.759
3utg FDAUDP-galactopyranose mutase / 0.759
4u8o FDAUDP-galactopyranose mutase / 0.752
4u8p FDAUDP-galactopyranose mutase / 0.752
4gut FADLysine-specific histone demethylase 1B 1 0.749
4u8l FDAUDP-galactopyranose mutase / 0.748
2yg7 FADPutrescine oxidase / 0.747
3hdy FDAUDP-galactopyranose mutase / 0.747
2yg6 FADPutrescine oxidase / 0.745
4u8n FDAUDP-galactopyranose mutase / 0.745
4xbf FADLysine-specific histone demethylase 1A 1 0.745
3r9u FADThioredoxin reductase / 0.737
2dw4 FADLysine-specific histone demethylase 1A 1 0.736
3ukk FDAUDP-galactopyranose mutase / 0.736
3rnm FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.733
3cox FADCholesterol oxidase 1.1.3.6 0.727
3rha FDAPutrescine oxidase / 0.727
1gth FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.726
4gur FADLysine-specific histone demethylase 1B 1 0.726
4rek FADCholesterol oxidase 1.1.3.6 0.726
1yy5 FADPolyamine oxidase FMS1 / 0.725
1e1n FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.724
4ocg FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.724
1h83 FADPolyamine oxidase 1.5.3.14 0.723
2jae FADL-amino acid oxidase / 0.723
2gh5 FADGlutathione reductase, mitochondrial 1.8.1.7 0.722
2yg3 FADPutrescine oxidase / 0.722
1e1m FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.721
1z6l FADPolyamine oxidase FMS1 / 0.720
5hhf FDAUDP-galactopyranose mutase / 0.720
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.719
3ef6 FADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component 1.18.1.3 0.718
3ukl FADUDP-galactopyranose mutase / 0.717
4ech FADPolyamine oxidase FMS1 / 0.717
4mih FADPyranose 2-oxidase 1.1.3.10 0.717
2bry FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.716
2y48 FADLysine-specific histone demethylase 1A 1 0.716
2ylz FADPhenylacetone monooxygenase 1.14.13.92 0.716
3zdn FADMonoamine oxidase N 1.4.3.4 0.716
1h81 FADPolyamine oxidase 1.5.3.14 0.715
3dh9 FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.715
1tdf FADThioredoxin reductase 1.8.1.9 0.714
3dk8 FADGlutathione reductase, mitochondrial 1.8.1.7 0.713
3icr FADCoenzyme A disulfide reductase / 0.711
4fwe FADLysine-specific histone demethylase 1B 1 0.711
1get FADGlutathione reductase 1.8.1.7 0.709
3qj4 FADRenalase / 0.709
1jnz FADAdenylylsulfate reductase, subunit A (AprA) / 0.708
1jnr FADAdenylylsulfate reductase, subunit A (AprA) / 0.707
2vvl FADMonoamine oxidase N 1.4.3.4 0.707
3oc4 FADOxidoreductase, pyridine nucleotide-disulfide family / 0.707
4b64 FADL-ornithine N(5)-monooxygenase / 0.706
1b8s FADCholesterol oxidase 1.1.3.6 0.705
3utf FDAUDP-galactopyranose mutase / 0.705
4jnq FDAThioredoxin reductase / 0.705
1d7y FADFerredoxin reductase / 0.703
1gre FADGlutathione reductase, mitochondrial 1.8.1.7 0.703
1f8s FADL-amino-acid oxidase 1.4.3.2 0.702
3t37 FADPyridoxine 4-oxidase / 0.702
4u2t FADCholesterol oxidase 1.1.3.6 0.702
1lqu FADNADPH-ferredoxin reductase FprA 1.18.1.2 0.700
4qi4 FADCellobiose dehydrogenase / 0.700
2gvc FADThiol-specific monooxygenase 1.14.13 0.699
2yr5 FADPhenylalanine 2-monooxygenase precursor 1.13.12.9 0.698
3uth FDAUDP-galactopyranose mutase / 0.698
2yr4 FADPhenylalanine 2-monooxygenase precursor 1.13.12.9 0.697
4gdc FADUDP-galactopyranose mutase / 0.697
1cjc FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.696
1e1k FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.696
1ger FADGlutathione reductase 1.8.1.7 0.696
3cgc FADCoenzyme A disulfide reductase / 0.696
3nn6 FB06-hydroxy-L-nicotine oxidase / 0.696
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.696
1rsg FADPolyamine oxidase FMS1 / 0.695
4xwr FADCholesterol oxidase 1.1.3.6 0.695
1e1l FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.694
2gew FADCholesterol oxidase 1.1.3.6 0.694
3gyj FADCholesterol oxidase 1.1.3.6 0.694
2iw5 FADLysine-specific histone demethylase 1A 1 0.693
1tde FADThioredoxin reductase 1.8.1.9 0.692
3djg FADGlutathione reductase, mitochondrial 1.8.1.7 0.692
3gwd FADCyclohexanone monooxygenase / 0.692
3ukk FADUDP-galactopyranose mutase / 0.692
4hsu FADLysine-specific histone demethylase 1B 1 0.691
3gyi FADCholesterol oxidase 1.1.3.6 0.690
3ict FADCoenzyme A disulfide reductase / 0.690
4yac NAIC alpha-dehydrogenase / 0.690
4u2l SFDCholesterol oxidase 1.1.3.6 0.688
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.687
3kpf FADPolyamine oxidase 1.5.3.14 0.687
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.686
2ign FADPyranose 2-oxidase / 0.686
2ylt FADPhenylacetone monooxygenase 1.14.13.92 0.686
3cnd FADPolyamine oxidase FMS1 / 0.686
2gr0 FADFerredoxin reductase / 0.685
2gv8 FADThiol-specific monooxygenase 1.14.13 0.685
2fjb SFDAdenylylsulfate reductase, subunit A (AprA) / 0.684
4u8j FDAUDP-galactopyranose mutase / 0.684
1b4v FADCholesterol oxidase 1.1.3.6 0.683
1w4x FADPhenylacetone monooxygenase 1.14.13.92 0.683
2q0k FADThioredoxin reductase 1.8.1.9 0.683
2gmh FADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial 1.5.5.1 0.682
1n4u FAECholesterol oxidase 1.1.3.6 0.681
1trb FADThioredoxin reductase 1.8.1.9 0.681
4fwj FADLysine-specific histone demethylase 1B 1 0.681
5j60 FADThioredoxin reductase / 0.681
1mxt FAECholesterol oxidase 1.1.3.6 0.680
1n1p FADCholesterol oxidase 1.1.3.6 0.680
2igo FADPyranose 2-oxidase / 0.680
3cty FADProbable thioredoxin reductase / 0.680
3ka7 FADPutative oxidoreductase / 0.680
3lb8 FADPutidaredoxin reductase 1.18.1.5 0.680
4tm3 FADKtzI / 0.680
4xxg FADCholesterol oxidase 1.1.3.6 0.680
1ges FADGlutathione reductase 1.8.1.7 0.679
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.679
1n4v FADCholesterol oxidase 1.1.3.6 0.679
1n4w FADCholesterol oxidase 1.1.3.6 0.679
2ard FDAFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.679
1ojt FADDihydrolipoyl dehydrogenase / 0.678
2ylx FADPhenylacetone monooxygenase 1.14.13.92 0.678
3bi2 FADPolyamine oxidase FMS1 / 0.678
3qvr FADGlucose oxidase 1.1.3.4 0.678
4mok FADPyranose 2-oxidase / 0.678
3pl8 FADPyranose 2-oxidase / 0.677
4gcm FADThioredoxin reductase 1.8.1.9 0.677
4lii FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.677
2whd FADThioredoxin reductase / 0.676
4opt FDAConserved Archaeal protein / 0.676
1cc2 FADCholesterol oxidase 1.1.3.6 0.675
1cf3 FADGlucose oxidase 1.1.3.4 0.675
1d4c FADFumarate reductase flavoprotein subunit 1.3.5.4 0.675
1ijh FADCholesterol oxidase 1.1.3.6 0.675
1zmd FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.675
2fja FADAdenylylsulfate reductase, subunit A (AprA) / 0.675
3k4c FADPyranose 2-oxidase / 0.675
3nt6 FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.675
1h6v FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.674
2xvf FADPutative flavin-containing monooxygenase / 0.674
3cnj FADCholesterol oxidase 1.1.3.6 0.674
5fs6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.674
1f8r FADL-amino-acid oxidase 1.4.3.2 0.673
2eq7 FADDihydrolipoyl dehydrogenase / 0.673
3k7t FAD6-hydroxy-L-nicotine oxidase / 0.673
3klj FADNADH-rubredoxin oxidoreductase 1.18.1.1 0.673
2qae FADDihydrolipoyl dehydrogenase 1.8.1.4 0.672
3fpz AHZThiamine thiazole synthase / 0.672
4j57 FADThioredoxin reductase 2 1.8.1.9 0.672
4i58 FADCyclohexylamine Oxidase / 0.671
3kkj FADRenalase / 0.670
4opl FDAConserved Archaeal protein / 0.670
1grb FADGlutathione reductase, mitochondrial 1.8.1.7 0.669
2gqw FADFerredoxin reductase / 0.669
4b1b FADThioredoxin reductase 1.8.1.9 0.669
4h4p FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.669
4h4t FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.669
4h4x FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.669
2b9x FADPutative aminooxidase / 0.668
2b9y FADPutative aminooxidase / 0.668
2eq8 FADDihydrolipoyl dehydrogenase / 0.668
2gr3 FADFerredoxin reductase / 0.668
2yvj FADFerredoxin reductase / 0.668
3b6d FAECholesterol oxidase 1.1.3.6 0.668
4fx9 FADCoenzyme A disulfide reductase 1.8.1.14 0.668
4jdr FADDihydrolipoyl dehydrogenase 1.8.1.4 0.668
1cbo FADCholesterol oxidase 1.1.3.6 0.667
1dnc FADGlutathione reductase, mitochondrial 1.8.1.7 0.667
2c3c FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.667
4h4z FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.667
3kve FADL-amino-acid oxidase / 0.666
5cku FADL-ornithine N(5)-monooxygenase / 0.666
1gpe FADGlucose oxidase 1.1.3.4 0.665
1tdk FADL-amino-acid oxidase 1.4.3.2 0.665
2c7g FADNADPH-ferredoxin reductase FprA 1.18.1.2 0.665
3atr FDAConserved Archaeal protein / 0.665
4gus FADLysine-specific histone demethylase 1B 1 0.665
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.665
1f3p FADFerredoxin reductase / 0.664
1gra FADGlutathione reductase, mitochondrial 1.8.1.7 0.664
1tdn FADL-amino-acid oxidase 1.4.3.2 0.664
2nvk FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.664
3cge FADCoenzyme A disulfide reductase / 0.664
3lsm SFDPyranose 2-oxidase / 0.664
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.664
5efw FMNNPH1-1 / 0.664
3uoz FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.663
4z26 FADPutative GMC-type oxidoreductase R135 1 0.663
1djn ADPTrimethylamine dehydrogenase 1.5.8.2 0.662
1djq ADPTrimethylamine dehydrogenase 1.5.8.2 0.662
1geu FADGlutathione reductase 1.8.1.7 0.662
1zmc FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.662
2hko FADLysine-specific histone demethylase 1A 1 0.662
2jb1 FADL-amino acid oxidase / 0.662
3djj FADGlutathione reductase, mitochondrial 1.8.1.7 0.662
5fs7 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.662
2rgj FADFlavin-containing monooxygenase / 0.661
3bnk FMNFlavoredoxin / 0.661
3dgh FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.661
4a5l FADThioredoxin reductase / 0.661
1gal FADGlucose oxidase 1.1.3.4 0.660
2b9w FADPutative aminooxidase / 0.659
3k30 ADPHistamine dehydrogenase / 0.659
3m12 FADMonomeric sarcosine oxidase 1.5.3.1 0.659
4qi5 FADCellobiose dehydrogenase / 0.659
4tlx FDAKtzI / 0.659
1npx FADNADH peroxidase 1.11.1.1 0.658
2bab FADPutative aminooxidase / 0.658
3gwf FADCyclohexanone monooxygenase / 0.658
4o5q FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.658
4udr FAD5-(hydroxymethyl)furfural oxidase / 0.658
2tmd ADPTrimethylamine dehydrogenase 1.5.8.2 0.657
4ccq FADThioredoxin reductase / 0.657
5eb5 FAD(R)-mandelonitrile lyase 1 4.1.2.10 0.657
1e6e FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.656
1o94 ADPTrimethylamine dehydrogenase 1.5.8.2 0.656
2ylr FADPhenylacetone monooxygenase 1.14.13.92 0.656
4gdd FADUDP-galactopyranose mutase / 0.656
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.655
1vdc FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.655
2iid FADL-amino-acid oxidase 1.4.3.2 0.655
2jk6 FADTrypanothione reductase / 0.655
3atq FDAConserved Archaeal protein / 0.655
4opi FDAConserved Archaeal protein / 0.655
5fs9 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.655
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.654
2xve FADPutative flavin-containing monooxygenase / 0.654
3lsh FADPyranose 2-oxidase / 0.654
4cnj FADL-amino acid oxidase / 0.654
4eqx FADCoenzyme A disulfide reductase / 0.654
1m6i FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.653
3bi5 FADPolyamine oxidase FMS1 / 0.653
4nzh FADL-ornithine N(5)-monooxygenase / 0.653
4u2s FDACholesterol oxidase 1.1.3.6 0.653
4rsl FADFructosyl peptide oxidase / 0.652
5l3d FADLysine-specific histone demethylase 1A 1 0.652
1bzl FADTrypanothione reductase 1.8.1.12 0.651
2npx FADNADH peroxidase 1.11.1.1 0.651
3f8d FADNADH oxidase/thioredoxin reductase / 0.651
3f8p NADNADH oxidase/thioredoxin reductase / 0.651
4eqw FADCoenzyme A disulfide reductase / 0.651
1gaq FADFerredoxin / 0.650
1nhp FADNADH peroxidase 1.11.1.1 0.650
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.650
1ri3 SAHmRNA cap guanine-N7 methyltransferase 2.1.1.56 0.650
2bac FADPutative aminooxidase / 0.650
2v0u FMNNPH1-1 / 0.650
2yvf FADFerredoxin reductase / 0.650
2zzc FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.650
3up4 FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.650
4em3 FADCoenzyme A disulfide reductase / 0.650
4h4w FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.650
4ttc FMNIodotyrosine deiodinase 1 / 0.650