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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2iwxM1SATP-dependent molecular chaperone HSP82

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
2iwxM1SATP-dependent molecular chaperone HSP82/1.000
2xd6XD6ATP-dependent molecular chaperone HSP82/0.678
2iwuNP5ATP-dependent molecular chaperone HSP82/0.640
2xx413IATP-dependent molecular chaperone HSP82/0.624
1bgqRDCATP-dependent molecular chaperone HSP82/0.618
2qg0A94Heat shock protein HSP 90-alpha/0.606
1u0zRDCEndoplasmin/0.596
3c11GDMATP-dependent molecular chaperone HSP82/0.595
2bz5AB4Heat shock protein HSP 90-alpha/0.590
3hhu819Heat shock protein HSP 90-alpha/0.589
3r4pFU7Heat shock protein HSP 90-alpha/0.589
4ce2BO5ATP-dependent molecular chaperone HSP82/0.588
2breKJ2ATP-dependent molecular chaperone HSP82/0.582
2brcCT5ATP-dependent molecular chaperone HSP82/0.575
2yi5YI5Heat shock protein HSP 90-alpha/0.573
3r4nFU5Heat shock protein HSP 90-alpha/0.570
4ce17FKATP-dependent molecular chaperone HSP82/0.570
2xabVHDHeat shock protein HSP 90-alpha/0.569
3rlq3RQHeat shock protein HSP 90-alpha/0.569
1u0yPA7Endoplasmin/0.568
1yc14BCHeat shock protein HSP 90-alpha/0.568
2bt0CT5Heat shock protein HSP 90-alpha/0.568
3ekrPY9Heat shock protein HSP 90-alpha/0.567
3k99PFTHeat shock protein HSP 90-alpha/0.566
3vhaVHAHeat shock protein HSP 90-alpha/0.566
1am1ADPATP-dependent molecular chaperone HSP82/0.565
2yegXQGHeat shock protein HSP 90-alpha/0.564
4bqjXKLHeat shock protein HSP 90-alpha/0.561
1qy5NECEndoplasmin/0.560
2wepADPATP-dependent molecular chaperone HSP82/0.559
3iedAN2HSP90/0.556
3rlr3RRHeat shock protein HSP 90-alpha/0.555
3whaWHAHeat shock protein HSP 90-alpha/0.555
1uy8PU5Heat shock protein HSP 90-alpha/0.552
2fypRDEEndoplasmin/0.552
2xhrC0PHeat shock protein HSP 90-alpha/0.552
3k981RCHeat shock protein HSP 90-alpha/0.551
1uy7PU4Heat shock protein HSP 90-alpha/0.548
2gfdRDAEndoplasmin/0.547
3b28B2XHeat shock protein HSP 90-alpha/0.547
2cgfP2NATP-dependent molecular chaperone HSP82/0.545
2hg1N5OEndoplasmin/0.545
2xk2ADPHeat shock protein HSP 90-alpha/0.545
3ekoPYUHeat shock protein HSP 90-alpha/0.544
2byh2D7Heat shock protein HSP 90-alpha/0.542
2xx213CATP-dependent molecular chaperone HSP82/0.542
2werRDCATP-dependent molecular chaperone HSP82/0.541
2qfoA13Heat shock protein HSP 90-alpha/0.538
3r4oFU3Heat shock protein HSP 90-alpha/0.538
3t2sAGSHeat shock protein HSP 90-alpha/0.538
4fcr0TMHeat shock protein HSP 90-alpha/0.536
1qy8RDIEndoplasmin/0.535
1yszNECEndoplasmin/0.535
2yee2ECHeat shock protein HSP 90-alpha/0.535
1u2oNECEndoplasmin/0.534
2iwsNP4ATP-dependent molecular chaperone HSP82/0.533
5f5rANPHeat shock protein 75 kDa, mitochondrial/0.533
2wi6ZZ6Heat shock protein HSP 90-alpha/0.532
3k974CDHeat shock protein HSP 90-alpha/0.531
2gqpPA7Endoplasmin/0.528
2yefANPHeat shock protein HSP 90-alpha/0.527
3hyz42CHeat shock protein HSP 90-alpha/0.527
1osfKOSHeat shock protein HSP 90-alpha/0.525
2byi2DDHeat shock protein HSP 90-alpha/0.525
2fxsRDAATP-dependent molecular chaperone HSP82/0.524
1uyePU9Heat shock protein HSP 90-alpha/0.522
4egiB2JHeat shock protein HSP 90-alpha/0.522
1amwADPATP-dependent molecular chaperone HSP82/0.521
1uydPU8Heat shock protein HSP 90-alpha/0.521
4as94QSATP-dependent molecular chaperone HSP82/0.521
4hy6FJ1Heat shock protein HSP 90-alpha/0.521
4ce3L4VATP-dependent molecular chaperone HSP82/0.519
2hchN5AEndoplasmin/0.518
1yetGDMHeat shock protein HSP 90-alpha/0.515
1yc34BCHeat shock protein HSP 90-alpha/0.514
2xcmADPCytosolic heat shock protein 90/0.512
3hekBD0Heat shock protein HSP 90-alpha/0.511
3t10ACPHeat shock protein HSP 90-alpha/0.511
2qfoA51Heat shock protein HSP 90-alpha/0.510
3hz5Z64Heat shock protein HSP 90-alpha/0.509
4xcjADPHeat shock cognate 90 kDa protein/0.508
3hz142CHeat shock protein HSP 90-alpha/0.506
4jqlVJ6Heat shock protein HSP 90-alpha/0.504
4gqtADPHeat shock protein 90/0.503
1uyiPUZHeat shock protein HSP 90-alpha/0.501
4ipeANPTNF receptor-associated protein 1/0.498
2fwyH64Heat shock protein HSP 90-alpha/0.497
2yjxYJXHeat shock protein HSP 90-alpha/0.497
3hz137DHeat shock protein HSP 90-alpha/0.496
3t1kANPHeat shock protein HSP 90-alpha/0.496
4eftEFTHeat shock protein HSP 90-alpha/0.496
1uy9PU6Heat shock protein HSP 90-alpha/0.494
2wi4ZZ4Heat shock protein HSP 90-alpha/0.494
2yeiXQIHeat shock protein HSP 90-alpha/0.492
2fwzH71Heat shock protein HSP 90-alpha/0.491
4xc0ACPHeat shock cognate 90 kDa protein/0.491
4c3f7KWTyrosine-protein kinase Lck2.7.10.20.490
1y4sADPChaperone protein HtpG/0.488
3q5kD1UHeat shock protein 83-1/0.487
4asg814ATP-dependent molecular chaperone HSP82/0.487
2xhtC0YHeat shock protein HSP 90-alpha/0.485
2ykjYKJHeat shock protein HSP 90-alpha/0.485
3d0bSNXHeat shock protein HSP 90-alpha/0.482
4asf62UATP-dependent molecular chaperone HSP82/0.481
1yc443PHeat shock protein HSP 90-alpha/0.480
2bu8ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial2.7.11.20.479
1diuBDMDihydrofolate reductase1.5.1.30.478
4hbgNDP3-oxoacyl-[acyl-carrier-protein] reductase1.1.1.1000.477
4l6gCNL1,8-cineole 2-endo-monooxygenase1.14.13.1560.477
1i59ANPChemotaxis protein CheA2.7.13.30.474
3c0i3AMPeripheral plasma membrane protein CASK2.7.11.10.474
4xclAGSHeat shock cognate 90 kDa protein/0.474
1ia1NDPDihydrofolate reductase1.5.1.30.473
2vbpVB1Isopenicillin N synthase1.21.3.10.473
1byqADPHeat shock protein HSP 90-alpha/0.472
2yejZZ3Heat shock protein HSP 90-alpha/0.472
4z1fH71Heat shock protein 75 kDa, mitochondrial/0.472
2xx513NATP-dependent molecular chaperone HSP82/0.471
3d2rADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.471
3lsiFADPyranose 2-oxidase/0.471
3pehIBDEndoplasmin homolog, putative/0.471
4nh82LCHeat shock protein HSP 90-alpha/0.471
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.470
1vsvNADGlyceraldehyde-3-phosphate dehydrogenase/0.470
3crlANP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial2.7.11.20.470
2d29FADAcyl-CoA dehydrogenase/0.469
4du82P0Mevalonate diphosphate decarboxylase/0.468
4lhtCNL1,8-cineole 2-endo-monooxygenase1.14.13.1560.467
2yejXQKHeat shock protein HSP 90-alpha/0.466
3inwJZBHeat shock protein HSP 90-alpha/0.466
2bu9HFVIsopenicillin N synthase1.21.3.10.465
4m11MXMProstaglandin G/H synthase 21.14.99.10.465
1dr3TAPDihydrofolate reductase1.5.1.30.464
1dr3HBIDihydrofolate reductase1.5.1.30.464
2xw7NDPDihydrofolate reductase/0.464
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.464
5d3qGDPDynamin-13.6.5.50.464
3p62FMNPentaerythritol tetranitrate reductase/0.463
4uyf73BBromodomain-containing protein 2/0.463
2q8iRDC[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial2.7.11.20.461
4l4eCAMCamphor 5-monooxygenase1.14.15.10.461
5fm7ADPRuvB-like helicase/0.461
1fxsNAPGDP-L-fucose synthase/0.460
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.460
1yt0ADPEndoplasmin/0.460
2rcyNAPPyrroline-5-carboxylate reductase/0.460
2zdxP4A[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.460
1o76CAMCamphor 5-monooxygenase1.14.15.10.459
3h3r14HCollagen type IV alpha-3-binding protein/0.459
4tvbNADHomospermidine synthase2.5.1.440.459
5cp4CAMCamphor 5-monooxygenase1.14.15.10.459
3au8NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic1.1.1.2670.458
3kb1ADPIron-sulfur cluster carrier protein/0.458
3ndcSAHPrecorrin-4 C(11)-methyltransferase2.1.1.1330.458
3s2uUD1UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase/0.458
4bcrWY1Peroxisome proliferator-activated receptor alpha/0.458
4l49CAMCamphor 5-monooxygenase1.14.15.10.458
4xx0COASuccinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial6.2.1.40.458
1nhhANPDNA mismatch repair protein MutL/0.457
2o1uANPEndoplasmin/0.457
3umpATPATP-dependent 6-phosphofructokinase isozyme 22.7.1.110.457
1bwsNDPGDP-L-fucose synthase/0.456
1i58ACPChemotaxis protein CheA2.7.13.30.456
1zrzBI1Protein kinase C iota type2.7.11.130.456
3flkNAITartrate dehydrogenase/decarboxylase1.1.1.930.456
1t2bCNL1,8-cineole 2-endo-monooxygenase1.14.13.1560.455
1yrdCAMCamphor 5-monooxygenase1.14.15.10.455
2cy0NAPShikimate dehydrogenase (NADP(+))/0.455
2wedPP6Penicillopepsin-13.4.23.200.455
2zawCAMCamphor 5-monooxygenase1.14.15.10.455
2znnS44Peroxisome proliferator-activated receptor alpha/0.455
3atyFMNProstaglandin F2a synthase/0.455
4er7AW3Histone-lysine N-methyltransferase, H3 lysine-79 specific2.1.1.430.455
2a94AP0L-lactate dehydrogenase1.1.1.270.454
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.454
2itpAEEEpidermal growth factor receptor2.7.10.10.454
3t4eNADQuinate/shikimate dehydrogenase/0.454
4fmxCNL1,8-cineole 2-endo-monooxygenase1.14.13.1560.454
1f17NAIHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.453
1gebCAMCamphor 5-monooxygenase1.14.15.10.453
1uymPU3Heat shock protein HSP 90-beta/0.453
2ccu2D9Heat shock protein HSP 90-alpha/0.453
2xlsFADPutative flavin-containing monooxygenase/0.453
3h3sH15Collagen type IV alpha-3-binding protein/0.453
3wrhCAMCamphor 5-monooxygenase1.14.15.10.453
1r2jFADFkbI/0.452
2a5kAZPReplicase polyprotein 1ab3.4.220.452
2esaGDMEndoplasmin/0.452
2rhrEMOPutative ketoacyl reductase1.3.10.452
2wi5ZZ5Heat shock protein HSP 90-alpha/0.452
2xjxXJXHeat shock protein HSP 90-alpha/0.452
3b6zCO7Enoyl reductase LovC10.452
3h3t16HCollagen type IV alpha-3-binding protein/0.452
3mpiFADGlutaryl-CoA dehydrogenase1.3.99.320.452
4e93GUITyrosine-protein kinase Fes/Fps2.7.10.20.452
1n2sNAIdTDP-4-dehydrorhamnose reductase1.1.1.1330.451
3adaNADSubunit alpha of sarocosine oxidase/0.451
3cppCAMCamphor 5-monooxygenase1.14.15.10.451
4l4cCAMCamphor 5-monooxygenase1.14.15.10.451
1dz6CAMCamphor 5-monooxygenase1.14.15.10.450
1rb3MTXDihydrofolate reductase1.5.1.30.450
2po7CHDFerrochelatase, mitochondrial4.99.1.10.450
2wyvNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.450
3fwiCAMCamphor 5-monooxygenase1.14.15.10.450
3lshFADPyranose 2-oxidase/0.450
4mokFADPyranose 2-oxidase/0.450
4y93746Tyrosine-protein kinase/0.450
1df7MTXDihydrofolate reductase1.5.1.30.449
1jpaANPEphrin type-B receptor 22.7.10.10.449
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.449
1xe65FPPlasmepsin-23.4.23.390.449
2gjlFMNNitronate monooxygenase1.13.12.160.449
2he5NDPAldo-keto reductase family 1 member C211.1.10.449
2j14GNIPeroxisome proliferator-activated receptor delta/0.449
2ou2ACOHistone acetyltransferase KAT5/0.449
2zaxCAMCamphor 5-monooxygenase1.14.15.10.449
2znpK55Peroxisome proliferator-activated receptor delta/0.449
3ii43IIDihydrolipoyl dehydrogenase1.8.1.40.449
3qlrNDPDihydrofolate reductase1.5.1.30.449
4awo99BHeat shock protein HSP 90-alpha/0.449
4iqlFMNEnoyl-(Acyl-carrier-protein) reductase II/0.449
1ai9NDPDihydrofolate reductase1.5.1.30.448
2a1oCAMCamphor 5-monooxygenase1.14.15.10.448
2brbPFQSerine/threonine-protein kinase Chk12.7.11.10.448
2vwcBC2ATP-dependent molecular chaperone HSP82/0.448
2zkjADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.448
3wrmCAMCamphor 5-monooxygenase1.14.15.10.448
4awq592Heat shock protein HSP 90-alpha/0.448
1dhrNADDihydropteridine reductase1.5.1.340.447
1dyiFOLDihydrofolate reductase1.5.1.30.447
1qlhNADAlcohol dehydrogenase E chain1.1.1.10.447
2w3bNDPDihydrofolate reductase1.5.1.30.447
1hbvGANGag-Pol polyprotein/0.446
1idb0DOGag-Pol polyprotein/0.446
1uyuCAMCamphor 5-monooxygenase1.14.15.10.446
2b7aIZATyrosine-protein kinase JAK2/0.446
2vcmM11Isopenicillin N synthase1.21.3.10.446
2wi72KLHeat shock protein HSP 90-alpha/0.446
3a3bRBFLumazine protein/0.446
3l63CAMCamphor 5-monooxygenase1.14.15.10.446
4ebfNADPhosphonate dehydrogenase1.20.1.10.446
4l4aCAMCamphor 5-monooxygenase1.14.15.10.446
4l4dCAMCamphor 5-monooxygenase1.14.15.10.446
4ubtCOASteroid 3-ketoacyl-CoA thiolase/0.446
5ar4SB2Receptor-interacting serine/threonine-protein kinase 22.7.11.10.446
1iwjCAMCamphor 5-monooxygenase1.14.15.10.445
1mjaCOAHistone acetyltransferase ESA1/0.445
1pjcNADAlanine dehydrogenase/0.445
2qboCAMCamphor 5-monooxygenase1.14.15.10.445
3a99ANPSerine/threonine-protein kinase pim-12.7.11.10.445
3dgaNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.445
3qlsNDPDihydrofolate reductase1.5.1.30.445
3t0zATPHeat shock protein HSP 90-alpha/0.445
4q71FADBifunctional protein PutA/0.445
1bsvNDPGDP-L-fucose synthase/0.444
1qnfFADDeoxyribodipyrimidine photo-lyase4.1.99.30.444
1xe55FEPlasmepsin-23.4.23.390.444
2b4rAESGlyceraldehyde-3-phosphate dehydrogenase/0.444
2feuCAMCamphor 5-monooxygenase1.14.15.10.444
2x9fX9FEphrin type-B receptor 42.7.10.10.444
3kp4MIITranscriptional regulator TcaR/0.444
3o0iP54Heat shock protein HSP 90-alpha/0.444
3oafOAGDihydrofolate reductase1.5.1.30.444
4e2dFMNDehydrogenase/0.444
4enhFVXCholesterol 24-hydroxylase/0.444
4ia7BIVVitamin D3 receptor A/0.444
4l4fCAMCamphor 5-monooxygenase1.14.15.10.444
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.444
1ajxAH1Gag-Pol polyprotein3.4.23.160.443
2cjpVPREpoxide hydrolase/0.443
3b2eADPATPase GET3/0.443
3ggxGGXGag-Pol polyprotein/0.443
3kjsNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.443
3u9eCOALmo1369 protein/0.443
4eop1ROCyclin-dependent kinase 22.7.11.220.443
4jnkNAIL-lactate dehydrogenase A chain1.1.1.270.443
1ep1FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit1.3.1.140.442
1fy7COAHistone acetyltransferase ESA1/0.442
1kc1NDPdTDP-4-dehydrorhamnose reductase1.1.1.1330.442
1lf2R37Plasmepsin-23.4.23.390.442
1x8vESLLanosterol 14-alpha demethylase1.14.13.700.442
1y7lASN_LEU_ASN_ILECysteine synthase2.5.1.470.442
2a1hGBNBranched-chain-amino-acid aminotransferase, mitochondrial2.6.1.420.442
2chx090Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.442
2dvlFADAcyl-CoA dehydrogenase/0.442
2e0aANP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.442
2vn0TDZCytochrome P450 2C8/0.442
3atzFMNProstaglandin F2a synthase/0.442
3btsNADGalactose/lactose metabolism regulatory protein GAL80/0.442
3hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.442
3vvpBNUUncharacterized protein/0.442
4cp4CAMCamphor 5-monooxygenase1.14.15.10.442
4ktkKTKCytochrome P450/0.442
1dz4CAMCamphor 5-monooxygenase1.14.15.10.441
1efaNPFLactose operon repressor/0.441
1lsoNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.441
1uzwCDHIsopenicillin N synthase1.21.3.10.441
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.441
2z6iFMN2-nitropropane dioxygenase/0.441
3d4pNADL-lactate dehydrogenase 11.1.1.270.441
3ggaGGWGag-Pol polyprotein/0.441
3phiNDPShikimate dehydrogenase (NADP(+))/0.441
3qaaG04Gag-Pol polyprotein3.4.23.160.441
3s1dZIRCytokinin dehydrogenase 11.5.99.120.441
4g2rH1LProbable propionyl-CoA carboxylase beta chain 66.4.1.30.441
4i1iNADMalate dehydrogenase/0.441
4jauADPSensor histidine kinase/0.441
1mjbACOHistone acetyltransferase ESA1/0.440
1siqFADGlutaryl-CoA dehydrogenase, mitochondrial1.3.8.60.440
1vijBAYGag-Pol polyprotein/0.440
2oapANPType II secretion system protein (GspE-2)/0.440
4eph0RKCarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.440
4nd2A3DLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.440