1.910 Å
X-ray
2001-08-01
Name: | Ephrin type-B receptor 2 |
---|---|
ID: | EPHB2_MOUSE |
AC: | P54763 |
Organism: | Mus musculus |
Reign: | Eukaryota |
TaxID: | 10090 |
EC Number: | 2.7.10.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 20.877 |
---|---|
Number of residues: | 21 |
Including | |
Standard Amino Acids: | 21 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.446 | 1144.125 |
% Hydrophobic | % Polar |
---|---|
51.62 | 48.38 |
According to VolSite |
HET Code: | ANP |
---|---|
Formula: | C10H13N6O12P3 |
Molecular weight: | 502.164 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 50.43 % |
Polar Surface area: | 322.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-0.0016 | -11.4488 | 3.4331 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5 | CB | ALA- 659 | 3.72 | 0 | Hydrophobic |
N6 | O | GLU- 708 | 2.69 | 134.6 | H-Bond (Ligand Donor) |
N1 | N | MET- 710 | 2.96 | 154.28 | H-Bond (Protein Donor) |
C5 | CD1 | LEU- 761 | 3.67 | 0 | Hydrophobic |