Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Protein Data Bank Entry:

2b7a

2.000 Å

X-ray

2005-10-04

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Tyrosine-protein kinase JAK2
ID:JAK2_HUMAN
AC:O60674
Organism:Homo sapiens
Reign:Eukaryota
TaxID:9606
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:31.123
Number of residues:30
Including
Standard Amino Acids: 27
Non Standard Amino Acids: 0
Water Molecules: 3
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.037597.375

% Hydrophobic% Polar
43.5056.50
According to VolSite

Ligand :
2b7a_1 Structure
HET Code: IZA
Formula: C18H16FN3O
Molecular weight: 309.338 g/mol
DrugBank ID: DB04716
Buried Surface Area:68.84 %
Polar Surface area: 57.78 Å2
Number of
H-Bond Acceptors: 2
H-Bond Donors: 2
Rings: 4
Aromatic rings: 3
Anionic atoms: 0
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 1

Mass center Coordinates

XYZ
114.23665.50439.55787


Binding mode :
What is Poseview ?
  • 2D View
  • 3D View
Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
N0OHOH- 1392.91169.34H-Bond
(Ligand Donor)
C7CD1LEU- 8553.70Hydrophobic
C4CBLEU- 8553.920Hydrophobic
C6CD2LEU- 8553.640Hydrophobic
C16CG2VAL- 8633.620Hydrophobic
C9CG1VAL- 8634.010Hydrophobic
C10CBALA- 8804.330Hydrophobic
N2OGLU- 9302.98171.21H-Bond
(Ligand Donor)
F1CE1TYR- 9313.640Hydrophobic
O0NLEU- 9322.77173.08H-Bond
(Protein Donor)
C1CD2LEU- 9833.690Hydrophobic
C9CD1LEU- 9833.590Hydrophobic
C3CD2LEU- 9833.80Hydrophobic
C15CBASP- 9944.320Hydrophobic