2.700 Å
X-ray
2007-12-30
| Name: | Galactose/lactose metabolism regulatory protein GAL80 |
|---|---|
| ID: | GAL80_YEAST |
| AC: | P04387 |
| Organism: | Saccharomyces cerevisiae |
| Reign: | Eukaryota |
| TaxID: | 559292 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 90 % |
| E | 10 % |
| B-Factor: | 63.342 |
|---|---|
| Number of residues: | 43 |
| Including | |
| Standard Amino Acids: | 39 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 4 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.167 | 533.250 |
| % Hydrophobic | % Polar |
|---|---|
| 50.00 | 50.00 |
| According to VolSite | |

| HET Code: | NAD |
|---|---|
| Formula: | C21H26N7O14P2 |
| Molecular weight: | 662.417 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 61.21 % |
| Polar Surface area: | 343.54 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 18 |
| H-Bond Donors: | 6 |
| Rings: | 5 |
| Aromatic rings: | 3 |
| Anionic atoms: | 2 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 11 |
| X | Y | Z |
|---|---|---|
| 25.2887 | 15.429 | 34.6995 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C4B | CB | ASN- 26 | 4.5 | 0 | Hydrophobic |
| O3B | ND2 | ASN- 26 | 3.06 | 149.54 | H-Bond (Protein Donor) |
| O2B | ND2 | ASN- 26 | 3.45 | 148.87 | H-Bond (Protein Donor) |
| O2N | N | TRP- 31 | 2.77 | 165.66 | H-Bond (Protein Donor) |
| C5D | CB | TRP- 31 | 4.18 | 0 | Hydrophobic |
| C5N | CB | TRP- 31 | 4.19 | 0 | Hydrophobic |
| DuAr | DuAr | TRP- 31 | 3.95 | 0 | Aromatic Face/Face |
| C5D | CB | ALA- 93 | 4.36 | 0 | Hydrophobic |
| C1B | CG2 | ILE- 94 | 4.37 | 0 | Hydrophobic |
| O3D | O | ILE- 94 | 2.88 | 139.15 | H-Bond (Ligand Donor) |
| O1A | N | GLN- 95 | 3.25 | 144.6 | H-Bond (Protein Donor) |
| C3D | CG2 | VAL- 96 | 4.35 | 0 | Hydrophobic |
| N7N | OE1 | GLU- 122 | 3.09 | 174.16 | H-Bond (Ligand Donor) |
| C4D | CB | GLU- 122 | 3.78 | 0 | Hydrophobic |
| O2D | O | TRP- 123 | 3.12 | 168.13 | H-Bond (Ligand Donor) |
| O7N | NE2 | GLN- 151 | 3.21 | 163.75 | H-Bond (Protein Donor) |
| N7N | OE1 | GLN- 151 | 3.18 | 151.11 | H-Bond (Ligand Donor) |
| O2N | O | HOH- 444 | 2.85 | 157.94 | H-Bond (Protein Donor) |
| C5N | CB | ASP- 509 | 4.41 | 0 | Hydrophobic |