1.600 Å
X-ray
2009-10-22
Name: | Serine/threonine-protein kinase pim-1 |
---|---|
ID: | PIM1_HUMAN |
AC: | P11309 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 22.095 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 31 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 3 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.858 | 772.875 |
% Hydrophobic | % Polar |
---|---|
47.16 | 52.84 |
According to VolSite |
HET Code: | ANP |
---|---|
Formula: | C10H13N6O12P3 |
Molecular weight: | 502.164 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 50.59 % |
Polar Surface area: | 322.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-9.73974 | 82.9295 | -1.84581 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1' | CB | LEU- 44 | 4.06 | 0 | Hydrophobic |
C1' | CG1 | VAL- 52 | 4.11 | 0 | Hydrophobic |
C5' | CG2 | VAL- 52 | 4.14 | 0 | Hydrophobic |
O1A | NZ | LYS- 67 | 2.79 | 164.41 | H-Bond (Protein Donor) |
O1A | NZ | LYS- 67 | 2.79 | 0 | Ionic (Protein Cationic) |
N6 | O | GLU- 121 | 2.74 | 153.67 | H-Bond (Ligand Donor) |
C3' | CD1 | ILE- 185 | 4.16 | 0 | Hydrophobic |
O1B | O | HOH- 338 | 2.95 | 179.98 | H-Bond (Protein Donor) |
O3G | O | HOH- 343 | 2.57 | 179.96 | H-Bond (Protein Donor) |
O1G | MG | MG- 401 | 2.16 | 0 | Metal Acceptor |
O2B | MG | MG- 401 | 2.09 | 0 | Metal Acceptor |
O2A | MG | MG- 401 | 2.13 | 0 | Metal Acceptor |