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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4hhdFMNPhototropin-12.7.11.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4hhdFMNPhototropin-12.7.11.11.000
4eerFMNPhototropin-22.7.11.10.631
5djtFMNNPH1-2/0.605
2pr5FMNBlue-light photoreceptor/0.598
3ue6FMNAureochrome1/0.598
5djuFMNNPH1-2/0.586
2z6dFMNPhototropin-22.7.11.10.584
2v1aFMNNPH1-1/0.567
3is2FADVivid PAS protein VVD/0.567
4eepFMNPhototropin-22.7.11.10.566
5dkkFMNPredicted protein/0.564
4wujFMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy/0.563
1n9lFMNPutative blue light receptor/0.558
4eetFMNPhototropin-22.7.11.10.544
4eeuFMNPhototropin-22.7.11.10.542
1g28FMNPHY3/0.541
2v0uFMNNPH1-1/0.540
4r38RBFBlue-light-activated histidine kinase 22.7.13.30.532
2pd8FADVivid PAS protein VVD/0.531
3p7nFMNLight-activated DNA-binding protein EL222/0.530
1n9nFMNPutative blue light receptor/0.528
3t50FMNBlue-light-activated histidine kinase2.7.13.30.527
4hj6FMNLOV protein/0.523
5efwFMNNPH1-1/0.518
2pdtFADVivid PAS protein VVD/0.516
2z6cFMNPhototropin-12.7.11.10.516
2mwgFMNBlue-light photoreceptor/0.502
4eesFMNPhototropin-22.7.11.10.499
4hiaFMNLOV protein/0.499
5j4eFMNSensory box protein/0.499
5j3wFMNSensory box protein/0.489
3zkyWT4Isopenicillin N synthase1.21.3.10.485
3f3sNADLambda-crystallin homolog/0.484
1bk0ACVIsopenicillin N synthase1.21.3.10.482
4hnbFMNLOV protein/0.482
2iviACWIsopenicillin N synthase1.21.3.10.481
4hj3FMNLOV protein/0.481
3sw1FMNSensory box protein/0.480
4g2j0WFHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.480
3k3ePDBHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.478
4hj4FMNLOV protein/0.478
1hb3SCVIsopenicillin N synthase1.21.3.10.477
2y60M8FIsopenicillin N synthase1.21.3.10.476
3t99ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2/0.474
1l8qADPChromosomal replication initiator protein DnaA/0.472
3d8vUD1Bifunctional protein GlmU/0.472
3dy85GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.471
3t9aANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2/0.471
1zeoC01Peroxisome proliferator-activated receptor gamma/0.470
2ddoATPPyridoxine/pyridoxal/pyridoxamine kinase/0.470
1hb1OCVIsopenicillin N synthase1.21.3.10.469
2ouu35GcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.468
3u9eCOALmo1369 protein/0.468
3qlrNDPDihydrofolate reductase1.5.1.30.467
2p4yC03Peroxisome proliferator-activated receptor gamma/0.466
3zhqTPPMultifunctional 2-oxoglutarate metabolism enzyme1.2.4.20.466
2e08SAHDiphthine synthase/0.465
3zoiM2WIsopenicillin N synthase1.21.3.10.465
1f20FADNitric oxide synthase, brain1.14.13.390.464
3g45988cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.464
2fgjATPAlpha-hemolysin translocation ATP-binding protein HlyB/0.463
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.463
4yswFADXanthine dehydrogenase/oxidase/0.463
1phgMYTCamphor 5-monooxygenase1.14.15.10.462
4a6nFADTetX family tetracycline inactivation enzyme/0.462
4ezk0SDPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.462
4kgmATPUncharacterized protein/0.462
4kuoRBFPutative blue-light photoreceptor/0.462
1obnASVIsopenicillin N synthase1.21.3.10.461
1udaUFGUDP-glucose 4-epimerase5.1.3.20.461
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.461
4r3aRBFBlue-light-activated histidine kinase 22.7.13.30.461
1qiqACCIsopenicillin N synthase1.21.3.10.460
2q59240Peroxisome proliferator-activated receptor gamma/0.460
3dysIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.460
4lxhC1EAlpha/beta hydrolase fold/0.460
2h9iEADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.459
3dynPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.459
4ku2MYA3-oxoacyl-[ACP] synthase III/0.459
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.458
1qjfACSIsopenicillin N synthase1.21.3.10.458
2v4lABJPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.458
2vbpVB1Isopenicillin N synthase1.21.3.10.458
3g4gD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.458
1bdrIM1Gag-Pol polyprotein3.4.23.160.457
1jr8FADFAD-linked sulfhydryl oxidase ERV21.8.3.20.457
2d29FADAcyl-CoA dehydrogenase/0.457
2i4pDRHPeroxisome proliferator-activated receptor gamma/0.457
2wo7ASVIsopenicillin N synthase1.21.3.10.457
2y3rTIRTamL/0.457
4h8nNDPNADPH-dependent conjugated polyketone reductase C2/0.457
5iqfGDPBifunctional AAC/APH2.3.10.457
2weyEV1cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.456
3flkNAITartrate dehydrogenase/decarboxylase1.1.1.930.456
3gfbNADL-threonine 3-dehydrogenase/0.456
3ik6HCZGlutamate receptor 2/0.456
4enhFVXCholesterol 24-hydroxylase/0.456
1nlmUD1UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase/0.455
1t1sCBQ1-deoxy-D-xylulose 5-phosphate reductoisomerase1.1.1.2670.455
2yee2ECHeat shock protein HSP 90-alpha/0.455
3a8wATPProtein kinase C iota type2.7.11.130.455
3clyACPFibroblast growth factor receptor 2/0.455
3opdHIEHeat shock protein 83/0.455
4deeADPAurora kinase A2.7.11.10.455
1eioGCHGastrotropin/0.454
1fm4DXCMajor pollen allergen Bet v 1-L/0.454
1i24UPGUDP-sulfoquinovose synthase, chloroplastic3.13.1.10.454
1i58ACPChemotaxis protein CheA2.7.13.30.454
1kquBR4Phospholipase A2, membrane associated/0.454
1xkdNAPIsocitrate dehydrogenase [NADP]/0.454
1y0s331Peroxisome proliferator-activated receptor delta/0.454
2jb4A14Isopenicillin N synthase1.21.3.10.454
3ml8ML8Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.454
3tm0ANPAminoglycoside 3'-phosphotransferase2.7.1.950.454
4ambDUDPutative glycosyl transferase/0.454
4l9kEHFSerum albumin/0.454
1kqwRTLCellular retinol-binding protein type II/0.453
2gejGDDPhosphatidyl-myo-inositol mannosyltransferase2.4.1.570.453
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.453
3hx4ANPCalmodulin-domain protein kinase 1/0.453
3mdmFJZCholesterol 24-hydroxylase/0.453
3rdqDTBStreptavidin/0.453
3ruqADPChaperonin/0.453
4gvjADPNon-receptor tyrosine-protein kinase TYK22.7.10.20.453
1e5qNDPSaccharopine dehydrogenase [NADP(+), L-glutamate-forming]1.5.1.100.452
1j39UPGDNA beta-glucosyltransferase/0.452
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.452
1vcfFMNIsopentenyl-diphosphate delta-isomerase/0.452
2e4nSAHDiphthine synthase/0.452
2el3SAHDiphthine synthase/0.452
2o1sTDP1-deoxy-D-xylulose-5-phosphate synthase2.2.1.70.452
2p6lSAHDiphthine synthase/0.452
3dys5GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.452
3i60E86Mitogen-activated protein kinase 12.7.11.240.452
1j7uANPAminoglycoside 3'-phosphotransferase2.7.1.950.451
2clqSTUMitogen-activated protein kinase kinase kinase 52.7.11.250.451
2e8hSAHDiphthine synthase/0.451
2ejvNADL-threonine 3-dehydrogenase/0.451
2ek2SAHDiphthine synthase/0.451
2xzwATPNitrogen regulatory protein P-II/0.451
2y3rTRKTamL/0.451
2yy2IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.451
3zv64HBCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase1.3.1.560.451
1dd6MCIMetallo-beta-lactamase type 2/0.450
2jizANPATP synthase subunit beta, mitochondrial3.6.3.140.450
2nomDUTPoly(A) polymerase, putative/0.450
2owuSAHDiphthine synthase/0.450
2py3ACPFibroblast growth factor receptor 2/0.450
3itzP66Mitogen-activated protein kinase 14/0.450
3s1dZIRCytokinin dehydrogenase 11.5.99.120.450
4dc0NDPPutative ketoacyl reductase1.3.10.450
4kp71UQ1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic1.1.1.2670.450
5kghACOPredicted acetyltransferase/0.450
2gs7ANPEpidermal growth factor receptor2.7.10.10.449
4iwo1H4Serine/threonine-protein kinase TBK12.7.11.10.449
4k38SAMAnaerobic sulfatase-maturating enzyme1.8.980.449
4zohFADPutative oxidoreductase FAD-binding subunit/0.449
1sezFADProtoporphyrinogen oxidase, mitochondrial1.3.3.40.448
2chz093Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.448
2gjlFMNNitronate monooxygenase1.13.12.160.448
3dv3MEKDual specificity mitogen-activated protein kinase kinase 12.7.12.20.448
3ggfGVDSerine/threonine-protein kinase 26/0.448
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.448
4gt8ADPSensor protein VraS2.7.13.30.448
4ryvZEAProtein LlR18A/0.448
1g1aNADdTDP-glucose 4,6-dehydratase/0.447
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.447
2eeqSAHDiphthine synthase/0.447
3cd3STUTyrosine-protein kinase Fes/Fps2.7.10.20.447
3gobHXXDdmC/0.447
3ruhNADUDP-N-acetylglucosamine 4-epimerase/0.447
4mv8ACPBiotin carboxylase6.3.4.140.447
5cnnANPEpidermal growth factor receptor2.7.10.10.447
2g28TDKPyruvate dehydrogenase E1 component1.2.4.10.446
2p2qPRXAcetyl-coenzyme A synthetase/0.446
2pchSAHDiphthine synthase/0.446
2qo9ANPEphrin type-A receptor 32.7.10.10.446
3uylTYDProbable NDP-rhamnosyltransferase/0.446
3vt7VDXVitamin D3 receptor/0.446
4g2l0WLHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.446
4hle17VPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.446
4ku3MYA3-oxoacyl-[ACP] synthase III/0.446
4u97STUInterleukin-1 receptor-associated kinase 42.7.11.10.446
5a3bAPRSIR2 family protein/0.446
1qy5NECEndoplasmin/0.445
2a4nCOAAac(6')-Ii protein/0.445
2i4jDRJPeroxisome proliferator-activated receptor gamma/0.445
2npaMMBPeroxisome proliferator-activated receptor alpha/0.445
3dd125DGlycogen phosphorylase, liver form2.4.1.10.445
3ruvANPChaperonin/0.445
3t9fADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2/0.445
4c58824Cyclin-G-associated kinase2.7.11.10.445
4fvqATPTyrosine-protein kinase JAK2/0.445
4qi7FADCellobiose dehydrogenase/0.445
1i2cUPGUDP-sulfoquinovose synthase, chloroplastic3.13.1.10.444
2chx090Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.444
2p20PRXAcetyl-coenzyme A synthetase/0.444
2p2xSAHDiphthine synthase/0.444
2qd4CHDFerrochelatase, mitochondrial4.99.1.10.444
2qocANPEphrin type-A receptor 32.7.10.10.444
2rbeNDPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.444
2vigFADShort-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.10.444
3wv9FEGHmd co-occurring protein HcgE/0.444
4c77N01Phenylacetone monooxygenase1.14.13.920.444
4kukRBFPutative blue-light photoreceptor/0.444
4lfiGNPCasein kinase II subunit alpha2.7.11.10.444
4q4cADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2/0.444
4xj3GTPCyclic GMP-AMP synthase/0.444
5fm6ADPRuvB-like helicase/0.444
2djiFADPyruvate oxidase/0.443
2fm0M98cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.443
2gnhH52cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.443
2ou2ACOHistone acetyltransferase KAT5/0.443
2vw5BC6ATP-dependent molecular chaperone HSP82/0.443
2yyiFAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component1.14.14.90.443
3b9lAZZSerum albumin/0.443
3pjuC2EDiguanylate cyclase/phosphodiesterase/0.443
4a4vYFDPeroxisome proliferator-activated receptor gamma/0.443
4e907RGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.443
4ftn2HKSerine/threonine-protein kinase Chk12.7.11.10.443
4i0s1B5Tyrosine-protein kinase SYK2.7.10.20.443
4kq2U5PGlycogen [starch] synthase isoform 22.4.1.110.443
1j7kATPHolliday junction ATP-dependent DNA helicase RuvB/0.442
1q3wATUGlycogen synthase kinase-3 beta2.7.11.260.442
1w06W05Isopenicillin N synthase1.21.3.10.442
2bu9HFVIsopenicillin N synthase1.21.3.10.442
2d8aNADL-threonine 3-dehydrogenase/0.442
2gfsPQBMitogen-activated protein kinase 14/0.442
2psvMUVProtease/0.442
2qenADPWalker-Type ATPase/0.442
2z6rSAHDiphthine synthase/0.442
3lpkZ76Beta-secretase 13.4.23.460.442
3lqfNADGalactitol dehydrogenase/0.442
3p8iFMNPentaerythritol tetranitrate reductase/0.442
3pqbVGPPutative oxidoreductase/0.442
3t9eADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2/0.442
4bznUGXSerine/threonine-protein kinase pim-12.7.11.10.442
4fjz4FJPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.442
4yau2AMNADPH--cytochrome P450 reductase/0.442
4yr9NADL-threonine 3-dehydrogenase, mitochondrial1.1.1.1030.442
5hes032Mitogen-activated protein kinase kinase kinase 202.7.11.250.442
1e1qADPATP synthase subunit beta, mitochondrial3.6.3.140.441
1xonPILcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.441
2hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.441
2huqSAHDiphthine synthase/0.441
2po7CHDFerrochelatase, mitochondrial4.99.1.10.441
2w6nOA2Biotin carboxylase6.3.4.140.441
2xvu9DNSerum albumin/0.441
3jswJARHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.441
3okxSAMS-adenosyl-L-methionine-binding protein RPA0152/0.441
3ozd4CTS-methyl-5'-thioadenosine phosphorylase/0.441
3w32W32Epidermal growth factor receptor2.7.10.10.441
4fuyEK2Mitogen-activated protein kinase 12.7.11.240.441
4fvrATPTyrosine-protein kinase JAK2/0.441
5ej9TPP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase/0.441
5eowFAD6-hydroxynicotinate 3-monooxygenase1.14.13.1140.441
5i4nATPTyrosine-protein kinase JAK2/0.441
1jstATPCyclin-dependent kinase 22.7.11.220.440
1y2d4DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.440
1y4lSVRBasic phospholipase A2 homolog 2/0.440
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.440
2q5g1FAPeroxisome proliferator-activated receptor delta/0.440
2qa2FADPolyketide oxygenase CabE/0.440
2y9qANPMitogen-activated protein kinase 12.7.11.240.440
3jqpA2PFerredoxin--NADP reductase, apicoplast/0.440
3owj1ELCasein kinase II subunit alpha2.7.11.10.440
3wd9QPCcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.440
4a4qUX9Pol protein/0.440
4bcrWY1Peroxisome proliferator-activated receptor alpha/0.440
4c3yANB3-ketosteroid dehydrogenase/0.440
4ead0NPThymidine phosphorylase2.4.2.40.440
4wsoNADProbable nicotinate-nucleotide adenylyltransferase/0.440
5awmANPStress-activated protein kinase JNK2.7.11.240.440
5uviZMAAdenosine receptor A2a/0.440