1.490 Å
X-ray
2010-12-09
Name: | UDP-N-acetylmuramoylalanine--D-glutamate ligase |
---|---|
ID: | MURD_ECOLI |
AC: | P14900 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | 6.3.2.9 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 19.525 |
---|---|
Number of residues: | 42 |
Including | |
Standard Amino Acids: | 37 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 4 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.101 | 1002.375 |
% Hydrophobic | % Polar |
---|---|
49.83 | 50.17 |
According to VolSite |
HET Code: | T26 |
---|---|
Formula: | C23H18N3O6S2 |
Molecular weight: | 496.536 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 53.41 % |
Polar Surface area: | 209.95 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 9 |
H-Bond Donors: | 2 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 10 |
X | Y | Z |
---|---|---|
-12.3072 | 31.7177 | 54.1384 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
NAX | OG1 | THR- 36 | 2.59 | 170.85 | H-Bond (Ligand Donor) |
CAO | CB | PRO- 72 | 4.35 | 0 | Hydrophobic |
CAP | CG | PRO- 72 | 4.39 | 0 | Hydrophobic |
CAN | CD1 | ILE- 139 | 3.64 | 0 | Hydrophobic |
CAR | CD1 | ILE- 139 | 3.68 | 0 | Hydrophobic |
OXT | NZ | LYS- 319 | 3.56 | 0 | Ionic (Protein Cationic) |
CB | CG2 | THR- 321 | 4.04 | 0 | Hydrophobic |
CG | CB | ALA- 414 | 3.93 | 0 | Hydrophobic |
OE1 | N | SER- 415 | 2.79 | 160.14 | H-Bond (Protein Donor) |
OE1 | OG | SER- 415 | 2.85 | 157.99 | H-Bond (Protein Donor) |
CG | CG | LEU- 416 | 4.09 | 0 | Hydrophobic |
OE2 | N | PHE- 422 | 2.89 | 137.65 | H-Bond (Protein Donor) |
CB | CD1 | PHE- 422 | 4.5 | 0 | Hydrophobic |