2.060 Å
X-ray
2013-09-23
| Name: | Biotin carboxylase |
|---|---|
| ID: | ACCC_HAEIN |
| AC: | P43873 |
| Organism: | Haemophilus influenzae |
| Reign: | Bacteria |
| TaxID: | 71421 |
| EC Number: | 6.3.4.14 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 69.071 |
|---|---|
| Number of residues: | 30 |
| Including | |
| Standard Amino Acids: | 30 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.414 | 681.750 |
| % Hydrophobic | % Polar |
|---|---|
| 40.59 | 59.41 |
| According to VolSite | |

| HET Code: | ACP |
|---|---|
| Formula: | C11H14N5O12P3 |
| Molecular weight: | 501.176 g/mol |
| DrugBank ID: | DB03909 |
| Buried Surface Area: | 49.31 % |
| Polar Surface area: | 310.64 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 16 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -78.1219 | 27.3686 | -9.78068 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1A | NZ | LYS- 116 | 2.98 | 149.13 | H-Bond (Protein Donor) |
| O1A | NZ | LYS- 116 | 2.98 | 0 | Ionic (Protein Cationic) |
| N7 | NZ | LYS- 159 | 2.96 | 154.87 | H-Bond (Protein Donor) |
| C4' | SD | MET- 169 | 4.45 | 0 | Hydrophobic |
| C1' | CE | MET- 169 | 4 | 0 | Hydrophobic |
| N6 | OE2 | GLU- 201 | 3.07 | 156.97 | H-Bond (Ligand Donor) |
| N6 | O | LYS- 202 | 2.81 | 148.26 | H-Bond (Ligand Donor) |
| N1 | N | LEU- 204 | 3.14 | 168.19 | H-Bond (Protein Donor) |
| C2' | CD2 | LEU- 278 | 4.42 | 0 | Hydrophobic |
| C3' | CD1 | ILE- 287 | 4.49 | 0 | Hydrophobic |
| C2' | CD1 | ILE- 437 | 4.01 | 0 | Hydrophobic |