2.060 Å
X-ray
2013-09-23
Name: | Biotin carboxylase |
---|---|
ID: | ACCC_HAEIN |
AC: | P43873 |
Organism: | Haemophilus influenzae |
Reign: | Bacteria |
TaxID: | 71421 |
EC Number: | 6.3.4.14 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 69.071 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.414 | 681.750 |
% Hydrophobic | % Polar |
---|---|
40.59 | 59.41 |
According to VolSite |
HET Code: | ACP |
---|---|
Formula: | C11H14N5O12P3 |
Molecular weight: | 501.176 g/mol |
DrugBank ID: | DB03909 |
Buried Surface Area: | 49.31 % |
Polar Surface area: | 310.64 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-78.1219 | 27.3686 | -9.78068 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1A | NZ | LYS- 116 | 2.98 | 149.13 | H-Bond (Protein Donor) |
O1A | NZ | LYS- 116 | 2.98 | 0 | Ionic (Protein Cationic) |
N7 | NZ | LYS- 159 | 2.96 | 154.87 | H-Bond (Protein Donor) |
C4' | SD | MET- 169 | 4.45 | 0 | Hydrophobic |
C1' | CE | MET- 169 | 4 | 0 | Hydrophobic |
N6 | OE2 | GLU- 201 | 3.07 | 156.97 | H-Bond (Ligand Donor) |
N6 | O | LYS- 202 | 2.81 | 148.26 | H-Bond (Ligand Donor) |
N1 | N | LEU- 204 | 3.14 | 168.19 | H-Bond (Protein Donor) |
C2' | CD2 | LEU- 278 | 4.42 | 0 | Hydrophobic |
C3' | CD1 | ILE- 287 | 4.49 | 0 | Hydrophobic |
C2' | CD1 | ILE- 437 | 4.01 | 0 | Hydrophobic |