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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4mv8 ACP Biotin carboxylase 6.3.4.14

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4mv8 ACPBiotin carboxylase 6.3.4.14 0.912
2vr1 ATFBiotin carboxylase 6.3.4.14 0.702
4mv1 ADPBiotin carboxylase 6.3.4.14 0.700
4mv3 ACPBiotin carboxylase 6.3.4.14 0.699
1iah ADPTransient receptor potential cation channel subfamily M member 7 2.7.11.1 0.698
1ia9 ANPTransient receptor potential cation channel subfamily M member 7 2.7.11.1 0.695
2vqd AP2Biotin carboxylase 6.3.4.14 0.694
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.692
4zme ADNMyosin heavy chain kinase A 2.7.11.7 0.691
3eps ATPIsocitrate dehydrogenase kinase/phosphatase / 0.685
3t9f ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.679
1ir3 ANPInsulin receptor 2.7.10.1 0.676
4nzo ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.675
2j9g ADPBiotin carboxylase 6.3.4.14 0.671
1z2n ADPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.670
4q4c ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.670
1zar ADPRIO-type serine/threonine-protein kinase Rio2 2.7.11.1 0.669
4hpt ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.669
3tw6 ADPPyruvate carboxylase / 0.668
3t99 ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.667
4iak ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.667
4oav ACP2-5A-dependent ribonuclease 3.1.26 0.665
4fi1 ATPCasein kinase II subunit alpha 2.7.11.1 0.664
4mwh ATPCasein kinase II subunit alpha 2.7.11.1 0.664
1o6k ANPRAC-beta serine/threonine-protein kinase 2.7.11.1 0.663
3a7h ATPSerine/threonine-protein kinase 24 2.7.11.1 0.661
3idb ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.660
4o1p ANPRibonuclease L / 0.659
2cjm ATPCyclin-dependent kinase 2 2.7.11.22 0.658
3c4x ATPRhodopsin kinase / 0.656
3uim ANPBRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 2.7.10.1 0.655
4bfm ANPMaternal embryonic leucine zipper kinase 2.7.11.1 0.655
3lmi ATPMyosin heavy chain kinase A 2.7.11.7 0.654
3k5h ATPPhosphoribosyl-aminoimidazole carboxylase / 0.653
4cnf MTASpoU rRNA methylase / 0.653
4y12 AGSSerine/threonine-protein kinase PknG 2.7.11.1 0.653
1jkk ANPDeath-associated protein kinase 1 2.7.11.1 0.652
2egw SAHRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.652
3r5f ATPD-alanine--D-alanine ligase / 0.652
4zse ANPEpidermal growth factor receptor 2.7.10.1 0.652
1zth ADPRIO-type serine/threonine-protein kinase Rio1 2.7.11.1 0.650
3gu6 ADPDeath-associated protein kinase 1 2.7.11.1 0.650