1.870 Å
X-ray
2008-12-18
Name: | Biotin carboxylase |
---|---|
ID: | ACCC_ECOLI |
AC: | P24182 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | 6.3.4.14 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 21.114 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 31 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 4 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.017 | 1211.625 |
% Hydrophobic | % Polar |
---|---|
39.55 | 60.45 |
According to VolSite |
HET Code: | OA2 |
---|---|
Formula: | C18H17N3O2 |
Molecular weight: | 307.346 g/mol |
DrugBank ID: | DB08315 |
Buried Surface Area: | 62.44 % |
Polar Surface area: | 72.36 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 1 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
3.39096 | -22.1291 | 23.9202 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C19 | CD1 | ILE- 157 | 3.51 | 0 | Hydrophobic |
O2 | NZ | LYS- 159 | 2.85 | 155.03 | H-Bond (Protein Donor) |
C19 | SD | MET- 169 | 3.84 | 0 | Hydrophobic |
C21 | CG2 | VAL- 171 | 3.96 | 0 | Hydrophobic |
N8 | OE2 | GLU- 201 | 2.87 | 162.88 | H-Bond (Ligand Donor) |
N8 | O | LYS- 202 | 2.78 | 159.89 | H-Bond (Ligand Donor) |
N7 | N | LEU- 204 | 3.01 | 176.33 | H-Bond (Protein Donor) |
C15 | CB | HIS- 209 | 4.1 | 0 | Hydrophobic |
C14 | CG | GLN- 233 | 4.41 | 0 | Hydrophobic |
C12 | CD2 | LEU- 278 | 3.94 | 0 | Hydrophobic |
C17 | CG2 | ILE- 437 | 3.92 | 0 | Hydrophobic |
C20 | CD1 | ILE- 437 | 4.1 | 0 | Hydrophobic |
C12 | CD1 | ILE- 437 | 4.25 | 0 | Hydrophobic |