3.000 Å
X-ray
2009-09-07
| Name: | Ferredoxin--NADP reductase, apicoplast |
|---|---|
| ID: | C6KT68_PLAF7 |
| AC: | C6KT68 |
| Organism: | Plasmodium falciparum |
| Reign: | Eukaryota |
| TaxID: | 36329 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| E | 26 % |
| F | 74 % |
| B-Factor: | 76.099 |
|---|---|
| Number of residues: | 35 |
| Including | |
| Standard Amino Acids: | 34 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.059 | 2713.500 |
| % Hydrophobic | % Polar |
|---|---|
| 46.52 | 53.48 |
| According to VolSite | |

| HET Code: | A2P |
|---|---|
| Formula: | C10H11N5O10P2 |
| Molecular weight: | 423.169 g/mol |
| DrugBank ID: | DB02098 |
| Buried Surface Area: | 54.16 % |
| Polar Surface area: | 263.53 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 2 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -65.6843 | 38.4256 | 11.0371 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O5P | NZ | LYS- 119 | 3.67 | 0 | Ionic (Protein Cationic) |
| C5' | CB | THR- 178 | 3.49 | 0 | Hydrophobic |
| O3' | OG | SER- 247 | 2.73 | 154.89 | H-Bond (Ligand Donor) |
| C1' | CB | SER- 247 | 4.08 | 0 | Hydrophobic |
| O1P | OH | TYR- 258 | 2.54 | 120.66 | H-Bond (Protein Donor) |
| DuAr | DuAr | TYR- 258 | 3.62 | 0 | Aromatic Face/Face |
| C1' | CE1 | TYR- 258 | 3.55 | 0 | Hydrophobic |
| C1' | CD1 | LEU- 286 | 3.98 | 0 | Hydrophobic |
| C5' | CD1 | LEU- 286 | 4.26 | 0 | Hydrophobic |
| O5P | NZ | LYS- 287 | 3.82 | 0 | Ionic (Protein Cationic) |
| O1P | OG | SER- 288 | 3.12 | 131.12 | H-Bond (Protein Donor) |