3.000 Å
X-ray
2009-09-07
Name: | Ferredoxin--NADP reductase, apicoplast |
---|---|
ID: | C6KT68_PLAF7 |
AC: | C6KT68 |
Organism: | Plasmodium falciparum |
Reign: | Eukaryota |
TaxID: | 36329 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
E | 26 % |
F | 74 % |
B-Factor: | 76.099 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.059 | 2713.500 |
% Hydrophobic | % Polar |
---|---|
46.52 | 53.48 |
According to VolSite |
HET Code: | A2P |
---|---|
Formula: | C10H11N5O10P2 |
Molecular weight: | 423.169 g/mol |
DrugBank ID: | DB02098 |
Buried Surface Area: | 54.16 % |
Polar Surface area: | 263.53 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 2 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-65.6843 | 38.4256 | 11.0371 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O5P | NZ | LYS- 119 | 3.67 | 0 | Ionic (Protein Cationic) |
C5' | CB | THR- 178 | 3.49 | 0 | Hydrophobic |
O3' | OG | SER- 247 | 2.73 | 154.89 | H-Bond (Ligand Donor) |
C1' | CB | SER- 247 | 4.08 | 0 | Hydrophobic |
O1P | OH | TYR- 258 | 2.54 | 120.66 | H-Bond (Protein Donor) |
DuAr | DuAr | TYR- 258 | 3.62 | 0 | Aromatic Face/Face |
C1' | CE1 | TYR- 258 | 3.55 | 0 | Hydrophobic |
C1' | CD1 | LEU- 286 | 3.98 | 0 | Hydrophobic |
C5' | CD1 | LEU- 286 | 4.26 | 0 | Hydrophobic |
O5P | NZ | LYS- 287 | 3.82 | 0 | Ionic (Protein Cationic) |
O1P | OG | SER- 288 | 3.12 | 131.12 | H-Bond (Protein Donor) |